LOGAN stub/dryrun failed #106
Description
Description of the bug
Hi, I used the tumor-only model for the WGS run, for this script run, nextflow run LOGAN/main.nf --mode local -profile ci_stub --genome hg38 --outdir out --fastq_input "*R{1,2}.fastq.gz" --callers octopus,mutect2 -stub --vc --sv --cnv; I got the following message. Can anyone give me some suggestions? Thanks.
Command error:
WARNING: Not virtualizing pid namespace by configuration
WARNING: While bind mounting '/gs11:/gs11': destination is already in the mount point list
WARNING: While bind mounting '/gs12:/gs12': destination is already in the mount point list
WARNING: While bind mounting '/spin1:/spin1': destination is already in the mount point list
WARNING: While bind mounting '/fdb:/fdb': destination is already in the mount point list
WARNING: While bind mounting '/gpfs:/gpfs': destination is already in the mount point list
WARNING: skipping mount of /gs10: stat /gs10: no such file or directory
FATAL: container creation failed: mount /gs10->/gs10 error: while mounting /gs10: mount source /gs10 doesn't exist
Command used and terminal output
Relevant files
No response
System information
No response