SeqRuler

Fixed issues with loading bar progress exceeding 100% for large input files.

Added output enumeration mode with -e flag (command line online). It helps reduce output file size for large input data. When enabled, the output files will represent the source and target sequence names as numbers, enumerating them from 0...N-1, as in:

// distance output file:
Source, Target, Distance
0, 1, 0.123
0, 2, 0.456
1, 2, 0.567

It will then also produce a second output file giving the translation between a number and it's sequence id:

// translation (map) file
0,sequence_a,  
1,sequence_b,
2,sequence_c