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@sateeshperi sateeshperi released this 01 Apr 16:43
· 231 commits to master since this release
v1.1
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Learn about vigilant mode.

v1.1 Candid Aura - [04/01/2022]

Added

Fixed

  • Fixed bug in modules/local/lane_merge.nf that was causing samplesheet CSV file to not recognize R2 (closes #39)
  • Formatting of docs/output.md
  • Changed output file combined/vcf-to-fasta/combined_vcf-to-fasta.fasta -> combined/vcf-to-fasta/vcf-to-fasta.fasta
  • Output file combined/vcf-to-fasta/vcf-to-fasta.fasta will now replace stars * with dashes -
  • Output file combined/phylogeny/rapidnj/rapidnj_phylogeny.tre -> combined/phylogeny/rapidnj/rapidnj_phylogeny.nh
  • Output file combined/phylogeny/iqtree/vcf-to-fasta.fasta.treefile -> combined/phylogeny/iqtree/iqtree_phylogeny.nh
  • Output file combined/phylogeny/raxmlng/output.raxml.bestTree -> combined/phylogeny/raxmlng/raxmlng_bestTree.nh
  • Output file combined/phylogeny/raxmlng/output.raxml.support -> combined/phylogeny/raxmlng/raxmlng_support.nh

Dependencies

Deprecated

  • /results/qc output dir removed

TODO

  • Continue improving output docs
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