2.0.1

This release makes the potential frameshift introducing filter for variant calling results optional and off by default.

Added

• [config] filter_frameshift_variants pipeline parameter (default: false) for optionally filtering potential frameshift introducing variants from the TVC variant calling results prior to consensus sequence generation.

Changes

• [docs] Updated README.md and citation information.
• [update] Use TVC Flow Evaluator calculated allele fraction (AF) for computing GT in Bcftools filtered VCF instead of observation based counts.

Fixed

• [fix] Turned off potential frameshift variant filtering leading to inaccurate consensus sequences.
• [fix] Removed git diff action from docker.yml since features are unsupported by GHA.

What's Changed

• Fix aggressive frameshift variant filtering by @peterk87 in #3
• Release 2.0.1 by @peterk87 in #4

Full Changelog: 2.0.0...2.0.1