Hexagon and truncated hexagon#205
Merged
valeriaRaffuzzi merged 18 commits intoJun 30, 2026
Merged
Conversation
Added in the BEAVRS model with the D-bank partially inserted. Also fixed a flaw in the geometry where the outermost cell was defined such that there could be a rare particle lost between it and the geometry boundary.
valeriaRaffuzzi
approved these changes
May 7, 2026
valeriaRaffuzzi
left a comment
Member
There was a problem hiding this comment.
All looks good! I am approving it despite some comments because they are all related to the documentation and comments in the code, rather than changes or suggestions to the code itself. So feel free to merge directly after fixing the comments :)
Thanks for the implementation!
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
I've developed an axis-parallel hexagon. It is regular in all directions, i.e., has the same width. Its main limitation is that it can't handle reflective boundaries. This is due to the difficulty of handling reflective boundaries by transform. However, I imagine for most cases of interest where this is used as a boundary that periodic boundaries will be sufficient. I have added unit tests and modified the documentation. I have also added a truncated hexagon, which does allow any boundary conditions along the perpendicular direction.