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muset v0.6.0

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@CamilaDuitama CamilaDuitama released this 05 Nov 14:10
v0.6.0
ee93b1a

Added

  • --abundance-metric option to choose between mean (default) or median for unitig abundance calculation
  • --output-format option to output matrices as txt (default) or compressed tsv format
  • -e/--generate-maximal-unitigs-links flag to generate GGCAT CDBG with edges in BCALM2 format
  • generate_fof script to automatically create file-of-files from a directory with paired-end support
  • Unit tests for aggregator interfaces and statistical metrics
  • Separated interfaces for statistical metrics computation and matrix writing for better extensibility

Changed

  • Skip k-mer matrix filtering when all filter parameters are zero (f=0, F=0, n=0, N=0) for improved performance
  • Refactored unitig metric computation and matrix writing with cleaner separation of concerns

Performance

  • Filtering step now directly aggregates matrices when no actual filtering is needed, reducing I/O overhead

Full Changelog: v0.5.1...v0.6.0

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