Bump tifffile from 2023.2.28 to 2023.3.15

[dependabot]

Bumps tifffile from 2023.2.28 to 2023.3.15.

Release notes

Sourced from tifffile's releases.

v2023.3.15

Tifffile is a Python library to

1. store NumPy arrays in TIFF (Tagged Image File Format) files, and
2. read image and metadata from TIFF-like files used in bioimaging.

Image and metadata can be read from TIFF, BigTIFF, OME-TIFF, DNG, STK, LSM, SGI, NIHImage, ImageJ, MMStack, NDTiff, FluoView, ScanImage, SEQ, GEL, SVS, SCN, SIS, BIF, ZIF (Zoomable Image File Format), QPTIFF (QPI, PKI), NDPI, and GeoTIFF formatted files.

Image data can be read as NumPy arrays or Zarr arrays/groups from strips, tiles, pages (IFDs), SubIFDs, higher order series, and pyramidal levels.

Image data can be written to TIFF, BigTIFF, OME-TIFF, and ImageJ hyperstack compatible files in multi-page, volumetric, pyramidal, memory-mappable, tiled, predicted, or compressed form.

Many compression and predictor schemes are supported via the imagecodecs library, including LZW, PackBits, Deflate, PIXTIFF, LZMA, LERC, Zstd, JPEG (8 and 12-bit, lossless), JPEG 2000, JPEG XR, JPEG XL, WebP, PNG, Jetraw, 24-bit floating-point, and horizontal differencing.

Tifffile can also be used to inspect TIFF structures, read image data from multi-dimensional file sequences, write fsspec ReferenceFileSystem for TIFF files and image file sequences, patch TIFF tag values, and parse many proprietary metadata formats.

Changelog

Sourced from tifffile's changelog.

2023.3.15

• Pass 4980 tests.
• Fix corruption using tile generators with prediction/compression (#185).
• Add parser for Micro-Manager MMStack series (breaking).
• Return micromanager_metadata IndexMap as numpy array (breaking).
• Revert optimizations for Micro-Manager OME series.
• Do not use numcodecs zstd in write_fsspec (kerchunk issue 317).
• More type annotations.

Commits

• 39d7e55 Release v2023.3.15
• d0a64e7 Update CHANGES.rst
• fc5f5a4 Update tifffile/tifffile.py
• a88c0a0 Update tests/test_tifffile.py
• ad9773e Update tests/conftest.py
• 9e2b5cb Update tifffile/numcodecs.py
• c1231c7 Update docs/make.py
• See full diff in compare view

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