GUI Walkthrough: add one screenshot per section (workspace, dashboard, muscle, cuff, mesh, Cole-Cole, FEM, report)
Updated Pipeline Overview (markdown)
Tutorial: refresh 5 screenshots (register, login, activating, file menu, segment upload)
Updated Reproducing the Paper (markdown)
License & Citation: software release DOI 21281594 + data DOI 21300944
Updated Installation (markdown)
Reproducing the Paper: extract golgi_comsol_handover.tar.gz for Fig 4
wiki: new combined Zenodo record DOI 21300944; dataset in same record; dedup intro
Reproducing the Paper: add full-figure regeneration path (working-dataset archive)
wiki: concept DOI 21000094 + fetch_bundles.py in the reproduction steps
Reproducing the Paper: clarify bundle vs make_figures paths + fetch_bundles
Add illustrated GUI Tutorial (5 pages + 57 screenshots) Split the Alpha 2.4.1 end-to-end tutorial into a Tutorial hub plus four chapters (Accounts & Dashboard, Projects & Workspace, Build a Model, Simulate & Export). Merge imaging/segmentation + SUNDT glossary terms, add a Tutorial group to the sidebar, cross-link from Home and the GUI Walkthrough, and drop the stale FEATURES.md roadmap link.
Updated Home (markdown)
Reproducing the Paper: fig0N_* script names + make_figures.py driver
Updated _Sidebar (markdown)
golgi figure: document batch mode (directory of bundles)
Reproducible bundles: document cached thresholds + golgi figure command
Installation/FAQ: Windows needs WSL2 (no native-Windows petsc4py)
Link Zenodo study-bundle archive (10.5281/zenodo.21000095)
Add --override-channels
Add linux instruction
Home: use the static one-line logo (matches README)
Rework Installation: prerequisites first, single coherent flow, tissue-DB as step 3
Conductivity: golgi fetch-tissue-db downloader + IT'IS attribution (DOI)