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Chrisjurich/remove chem db#89

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chrisjurich merged 6 commits into
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chrisjurich/remove-chem-db
Oct 16, 2022
Merged

Chrisjurich/remove chem db#89
chrisjurich merged 6 commits into
develop_refactorfrom
chrisjurich/remove-chem-db

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@chrisjurich chrisjurich commented Oct 15, 2022

Removing the last traces of the load_from_db() calls from the enzy_htp.chemical.db submodule. Tests/installation should be possible now.

@chrisjurich chrisjurich requested a review from shaoqx October 15, 2022 07:14
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Nice! Just one minor change is requested.

Comment thread enzy_htp/chemical/residue.py Outdated
Comment thread enzy_htp/chemical/residue.py
Comment thread test/chemical/test_residue.py
Changed the formatting of data structures to be more readable and also added comments to prevent yapf from changing these in the future.
Added extra three letter codes for residues back in. Previously added by QZ in science_refactor PR
Changed test for number of three letter amino acid keys back to 29 to accomodate inclusion of extra keys.
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Good job!

@chrisjurich chrisjurich merged commit a8ce2be into develop_refactor Oct 16, 2022
@shaoqx shaoqx deleted the chrisjurich/remove-chem-db branch October 20, 2022 23:52
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2 participants