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Chercas/README.md
  • 👋 Hi, I’m @Chercas
  • 👀 I’m interested in application of the latest technologies in real life. Linear algebra, artificial intelligence, DSP, nuclear physics and unfiltered beer.
  • 🌱 I’m currently learning mathematical models behind deep learning.
  • 💞️ I’m looking to collaborate on open source projects in image related fields, bordering with ML.
  • 📫 How to reach me ...

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  1. fiberPhoto fiberPhoto Public

    Tools for Fiber photometry inside MRI. Including codes for Arduino board, to control lasers through TTL pulse width modulation. Simpliest MatLab code for acquisition and basic processing included.

    C++

  2. fMRI fMRI Public

    Simple preprocessing pipelines based on AFNI, FSL, ANTs and other packages, through Nipype. Pipelines include image co-registration, motion estimation, and variety of corrections.

    Jupyter Notebook

  3. fMRI_ROI_processing fMRI_ROI_processing Public

    Simple python notebooks for fixed effect fMRI data processing. Data comprise time series extracted voxel-wise from statistically significant clusters.

    Jupyter Notebook 1

  4. ML_2021 ML_2021 Public

    Trainig purposes repo for simple ML projects and play-arounds, sandbox for tips and tricks.

    Jupyter Notebook

  5. LBFGS_convex_opt_in_fMRI_CS LBFGS_convex_opt_in_fMRI_CS Public

    Limited BFGS solver for retrospectively compressed k-space reconstruction.

    Python

  6. Bruker_BCS Bruker_BCS Public

    Realization of blind compressed sensing on 9.4 and 15.2T systems. Solver is based on convex optimization through L1 norm. Prime version of Blind CS on Bruker 9.4 and 15.2 Tesla.

    MATLAB