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microeco v0.6.0

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@ChiLiubio ChiLiubio released this 16 Nov 06:30
· 930 commits to master since this release
  1. Add get_edge_table function in trans_network to get edges table easily.
  2. Add more available methods in function cal_module of trans_network.
  3. Add the otu_table checking in tidy_dataset function of microtable to remove taxa and samples with 0 abundance.
  4. Add pair_compare_filter_match and pair_compare_filter_select parameters and delete pair_compare_filter in plot_group_distance function in trans_beta.
  5. Add the multi-factor analysis of variance in cal_diff of trans_alpha class.
  6. Add filter_feature parameter in plot_cor of trans_env to filter taxa that are not required to show in the plot.
  7. Use binary data for jaccard index in cal_betadiv of microtable class.
  8. Add C-score calculation in trans_nullmodel class.
  9. Add add_rownames2taxonomy function in microtable class.
  10. Add the message in cal_node_type of trans_network when NaN occur.
  11. Add more available null model methods in cal_rcbray of trans_nullmodel class.
  12. Add cal_powerlaw_p and cal_powerlaw_fit functions in trans_network class.
  13. Add rename_taxa function in microtable to rename all taxa names easily.