Be more accepting of ways people express InChI#172
Merged
Conversation
lkubie
suggested changes
Jul 20, 2022
Contributor
lkubie
left a comment
There was a problem hiding this comment.
Added a little robustness and provided a real-life example as to why.
| self._inchi = None | ||
| elif isinstance(value, str): | ||
| if not value.lower().startswith('inchi'): | ||
| value = f"InChI=1S/{value}" |
Contributor
There was a problem hiding this comment.
I've seen this with the 1s/ so I want to check for that too. Here's Sigma Aldrich for example
Suggested change
| value = f"InChI=1S/{value}" | |
| if not value.lower().startswith("1s/") and not value.lower().startswith("1/"): | |
| value = f"InChI=1S/{value}" | |
| else: | |
| value = f"InChI={value}" |
Collaborator
Author
There was a problem hiding this comment.
Great catch; thanks!
| assert test_inchi.inchi == test_struct | ||
|
|
||
| assert InChI("inchi=1/C8H8O3").inchi == "InChI=1/C8H8O3" | ||
| assert InChI("C8H8O3").inchi == "InChI=1S/C8H8O3" |
Contributor
There was a problem hiding this comment.
Suggested change
| assert InChI("C8H8O3").inchi == "InChI=1S/C8H8O3" | |
| assert InChI("C8H8O3").inchi == "InChI=1S/C8H8O3" | |
| assert InChI("1/C8H8O3").inchi == "InChI=1/C8H8O3" | |
| assert InChI("1s/C8H8O3").inchi == "InChI=1s/C8H8O3" |
Collaborator
Author
There was a problem hiding this comment.
Good add, though the standard expects a capital S.
lkubie
approved these changes
Jul 20, 2022
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Improved filtering around InChI strings. I think this meets the requested functionality.