Fix symbolic SV coordinate collision, more modern multiprocessing, phasing fix and printing speedup

[3.11.0]

Added

• Pre-commit hooks with ruff for automatic check and format (#200)

Changed

• Compounds print_variant() to use cat which provides significant speedups for large variants (#189)
• Return phased genotype string from Genotype class if variant is phased (#195)
• Slightly more readable Genotype class (#195)
• Logging to use standard hierarchy instead of stderr (#203)
• Multiprocessing Manager to Queue in score compounds (#203)

Fixed

• Sorting command more inclusive for e.g. BusyBox sort for containers built with Bioconda (#198)
• Fix symbolic SVs being silently dropped when sharing the same CHROM,POS and REF (#191)
• Print header in genmod models when running with --processes 1 (#199)
• Fixed duplicate parameter -s in genmod models (#202)

New Contributors

• @alkc made their first contribution in #191

Full Changelog: 3.10.2...3.11