Panel-app etc

Added

• OMIM phenotypes to case report
• Command to download all panel app gene panels scout load panel --panel-app
• Links to genenames.org and omim on gene page
• Popup on gene at variants page with gene information
• reset sanger status to "Not validated" for pinned variants
• highlight cases with variants to be evaluated by Sanger on the cases page
• option to point to local reference files to the genome viewer pileup.js. Documented in docs.admin-guide.server
• option to export single variants in scout export variants
• option to load a multiqc report together with a case(add line in load config)
• added a view for searching HPO terms. It is accessed from the top left corner menu
• Updates the variants view for cancer variants. Adds a small cancer specific filter for known variants
• Adds hgvs information on cancer variants page
• Adds option to update phenotype groups from CLI

Fixed

• Improved Clinvar to submit variants from different cases. Fixed HPO terms in casedata according to feedback
• Fixed broken link to case page from Sanger modal in cases view
• Now only cases with non empty lists of causative variants are returned in adapter.case(has_causatives=True)
• Can handle Tumor only samples