Bugfixes and new features

[4.10.0]

Added

• Rank score model in causatives page
• Exportable HPO terms from phenotypes page
• AMP guideline tiers for cancer variants
• Adds scroll for the transcript tab
• Added CLI option to query cases on time since case event was added
• Shadow clinical assessments also on research variants display
• Support for CRAM alignment files
• Improved str variants view : sorting by locus, grouped by allele.
• Delivery report PDF export
• New mosaicism tag option
• Add or modify individuals' age or tissue type from case page
• Display GC and allele depth in causatives table.
• Included primary reference transcript in general report
• Included partial causative variants in general report

Fixed

• Fixed update OMIM command bug due to change in the header of the genemap2 file
• Removed Mosaic Tag from Cancer variants
• Fixes issue with unaligned table headers that comes with hidden Datatables
• Layout in general report PDF export
• Fixed issue on the case statistics view. The validation bars didn't show up when all institutes were selected. Now they do.
• Fixed missing path import by importing pathlib.Path
• Handle index inconsistencies in the update index functions
• Fixed layout problems