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Managed variants build update, improved download stability and Saltshaker

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@dnil dnil released this 11 May 14:38
· 57 commits to main since this release
v4.111
303a47c
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[4.111.0]

Added

  • Custom MT Saltshaker HTML report loading (#6242)
  • Command to download all PanelApp panels to file (#6239)
  • Alternatively load and update PANELAPP-GREEN panel from a pre-downloaded file (#6244)
  • Command to remove loaded rank models (#6262)

Changed

  • Default gnomAD linkout for hg38 to non_uk_biobank subset (#6250)
  • Handle conflicts and duplicates when uploading managed variants (#6256, #6258, #6259)
  • On caseS page, dynamically hide empty categories of cases (#6260)
  • scout download everything command downloads Ensembl data last, so that if the Ensembl download fails, it does not prevent the other files from being downloaded (#6269)

Fixed

  • Saltshaker report update command (#6246)
  • Managed variants counter, wrongly defaulting to build 37 (#6252)
  • Managed variants matching follows build on case page (#6254)
  • Updated docs on load case images (#6267)
  • Blog posts for 4.111 and 4.110 releases, removed obsolete expected_coverage key from documentation (#6270)
  • LoqusDB setting reset by non-admin changes to institute page (#6275)
  • CLI mt report command to use both M and MT chr names. Update documentation on MT var loading. (#6277)
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