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Managed variants, custom igv tracks, mitochondrial copy number and cancer CNV report

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@northwestwitch northwestwitch released this 06 Oct 07:50
72b19e0

[4.23]

Added

  • Save custom IGV track settings
  • Show a flash message with clear info about non-valid genes when gene panel creation fails
  • CNV report link in cancer case side navigation
  • Return to comment section after editing, deleting or submitting a comment
  • Managed variants
  • MT vs 14 chromosome mean coverage stats if Scout is connected to Chanjo

Fixed

  • missing vcf_cancer_sv and vcf_cancer_sv_research to manual.
  • Split ClinVar multiple clnsig values (slash-separated) and strip them of underscore for annotations without accession number
  • Timeout of All SNVs and INDELs page when no valid gene is provided in the search
  • Round CADD (MIPv9)
  • Missing default panel value
  • Invisible other causatives lines when other causatives lack gene symbols

Changed

  • Do not freeze mkdocs-material to version 4.6.1
  • Remove pre-commit dependency