Switch to PyMongo> 3.7, Docker image and other improvements

[4.24]

Added

• Institute-level phenotype models with sub-panels containing HPO and OMIM terms
• Runnable Docker demo
• Docker image build and push github action
• Makefile with shortcuts to docker commands
• Parse and save synopsis, phenotype and cohort terms from config files upon case upload

Fixed

• Update dismissed variant status when variant dismissed key is missing
• Breakpoint two IGV button now shows correct chromosome when different from bp1
• Missing font lib in Docker image causing the PDF report download page to crash
• Sentieon Manta calls lack Somaticscore - load anyway
• ClinVar submissions crashing due to pinned variants that are not loaded
• Point ExAC pLI score to new gnomad server address
• Bug uploading cases missing phenotype terms in config file
• STRs loaded but not shown on browser page
• Bug when using adapter.variant.get_causatives with case_id without causatives
• Problem with fetching "solved" from scout export cases cli
• Better serialising of datetime and bson.ObjectId
• Added volumes folder to .gitignore

Changed

• Make matching causative and managed variants foldable on case page
• Remove calls to PyMongo functions marked as deprecated in backend and frontend(as of version 3.7).
• Improved scout update individual command
• Export dynamic phenotypes with ordered gene lists as PDF