Gens integration and visualization of all alignments of a case group

[4.30]

Added

• Introduced a reset dismiss variant verb
• Button to reset all dismissed variants for a case
• Add black border to Chromograph ideograms
• Show ClinVar annotations on variantS page
• Added integration with GENS, copy number visualization tool
• Added a VUS label to the manual classification variant tags
• Add additional information to SNV verification emails
• Tooltips documenting manual annotations from default panels
• Case groups now show bam files from all cases on align view

Fixed

• Center initial igv view on variant start with SNV/indels
• Don't set initial igv view to negative coordinates
• Display of GQ for SV and STR
• Parsing of AD and related info for STRs
• LoqusDB field in institute settings accepts only existing Loqus instances
• Fix DECIPHER link to work after DECIPHER migrated to GRCh38
• Removed visibility window param from igv.js genes track
• Updated HPO download URL
• Patch HPO download test correctly
• Reference size on STR hover not needed (also wrong)
• Introduced genome build check (allowed values: 37, 38, "37", "38") on case load
• Improve case searching by assignee full name
• Populating the LoqusDB select in institute settings

Changed

• Cancer variants table header (pop freq etc)
• Only admin users can modify LoqusDB instance in Institute settings
• Style of case synopsis, variants and case comments
• Switched to igv.js 2.7.5
• Do not choke if case is missing research variants when research requested
• Improve create new gene panel form validation
• Make XM- transcripts less visible if they don't overlap with transcript refseq_id in variant page
• Color of gene panels and comments panels on cases and variant pages