feat(medcat): CU-869b09dk4 Update scripts download

[mart-r]

This updates the scripts downloader.

The help for the new CLI is as follows:

% python -m medcat download-scripts --help
usage: python -m medcat download-scripts [-h] [--overwrite-url OVERWRITE_URL] [--overwrite-tag OVERWRITE_TAG]
                                         [--log-level {DEBUG,INFO,WARNING,ERROR}]
                                         [destination]

Download medcat-scripts

positional arguments:
  destination           The destination folder for the scripts

options:
  -h, --help            show this help message and exit
  --overwrite-url OVERWRITE_URL
                        The URL to download and extract from. This is expected to refer to a .zip file that has a `medcat-scripts` folder.
  --overwrite-tag OVERWRITE_TAG
                        The tag to use from GitHub
  --log-level {DEBUG,INFO,WARNING,ERROR}
                        The log level for fetching

This means you can now specify a URL to download for.
For example, since there is currently not release with medcat-scripts, with the dev version this would download nothing because it won't find the medcat-scripts folde within the repo. However, you specify the overwrite URL to mitigate this:

python -m medcat download-scripts --overwrite-url https://github.com/CogStack/cogstack-nlp/archive/refs/heads/main.zip

Or, you can just specify the tag:

python -m medcat download-scripts --overwrite-tag main

[tomolopolis]

Task linked: CU-869b09dk4 Update scripts downloader for new format

[alhendrickson]

Epic, cheers for the time on this

[mart-r]

Note: the MedCAT main workflow be modified to remove the medcat-scripts tag creation.