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CU-8699q97m0 Fix supervised train negative examples #37

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Merged
merged 2 commits into from
Jul 8, 2025
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CU-8699q97m0 Fix supervised train negative examples #37

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782701c
CU-8699q97m0: Fix negative examples in supervised training data
mart-r Jul 8, 2025
051d7bf
CU-8699q97m0: Show better exceptions for KeyError when doing supervis…
mart-r Jul 8, 2025
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2 changes: 1 addition & 1 deletion medcat-v2/medcat/components/linking/vector_context_model.py
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Original file line number Diff line number Diff line change
Expand Up @@ -344,7 +344,7 @@ def train(self, cui: str, entity: MutableEntity, doc: MutableDocument,
if name not in self.name2info:
continue
per_cui_status = self.name2info[name]['per_cui_status']
cui_status = per_cui_status[cui]
cui_status = per_cui_status.get(cui, None)
if cui_status == ST.PRIMARY_STATUS_NO_DISAMB:
# Set this name to always be disambiguated, even
# though it is primary
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2 changes: 1 addition & 1 deletion medcat-v2/medcat/trainer.py
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Expand Up @@ -438,7 +438,7 @@ def _train_supervised_for_project2(self,
cui=cui, name=ann['value'], mut_doc=mut_doc,
mut_entity=mut_entity, negative=deleted,
devalue_others=devalue_others)
except ValueError as ve:
except (ValueError, KeyError) as ve:
context_window = 20 # characters
splitter_left, splitter_right = "<", ">"
cur_text = doc['text']
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