This repository contains the necessary code to conduct the analyses and reproduce the figures in Aguti, R. et al., bioRxiv, 2025, DOI: doi.org/10.1101/2025.11.13.688270. The Jupyter Notebook should be run under the malat1 conda environment, which can be installed using the environment.yml file.
Input files to perform MD simulations and docking calculations, as well as output data (including MD trajectories) generated in our work and necessary to reproduce the analyses are freely available in Zenodo with accession code 10.5281/zenodo.18872932.