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The current testing for the estimate_shifts() method compares the output of the method with a hardcoded result loaded from file. After some inspection, it appears that the estimated shifts do not correspond to the ground truth shifts of the Simulation source, ie. sim.offsets. I'll post the output below.
An effort is being made to replace this entire suite of hardcoded tests in PR #994, but a circle-back will be necessary to address this particular test/method.