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spec 010: personality taste, real speckit artifacts, PDF audit#148

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May 15, 2026
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spec 010: personality taste, real speckit artifacts, PDF audit#148
jeremymanning merged 13 commits into
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feature/personalities-speckit-real-pdf-audit

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Summary

Spec 010 lands three independent thrusts addressing user-reported issues:

  1. Personality taste/curation — extended the deterministic rubric with three new required axes (explicit position, liveness-checked adjacent_work, named interest_signal). The umbrella prompt + 10 persona cards now require these fields. Backward-compat fallback for legacy callers (zero-axis scoring) preserves existing integration tests.

  2. Real speckit artifacts — audit every .md under projects/**/specs/ and projects/**/.specify/ via _real_only_guard; transitively delete templates; roll project stages back via history walk. Executed against the repo: 6 templates deleted across 5 projects; second audit reports 0 templates → SC-003 achieved. New llmxive speckit audit-artifacts + prune-templates CLI commands.

  3. PDF audit — deterministic llmxive pdf-pipeline audit command (zero LLM calls, enforced by existing AST guard). Walks every PDF under docs/papers/, runs text-level checks via pdfplumber (literal LaTeX commands, citation glyphs, section-number monotonicity, author-block layout) and pixel hooks via pdf2image. Crash-tolerant with quarantine per FR-014 Clarification Q3. Executed against the repo: 8 PDFs audited, 35 source-fixable citation-style failures surfaced + section-heading false-positives fixed by tighter regex + bibliography-page skip.

Spec / plan / tasks artifacts

Clarifications recorded

  • Q1 (FR-002): adjacent-work pointer verification → liveness-checked on write (HEAD against arXiv/DOI/URL, 7-day cache).
  • Q2 (FR-001): position field representation → YAML frontmatter key.
  • Q3 (FR-014): PDF audit failure mode → quarantine + record, continue auditing.

Implementation summary

Component Files Lines
Liveness check src/llmxive/audit/liveness.py + tests ~240
Speckit prune src/llmxive/audit/speckit_prune.py + tests + CLI ~440
PDF audit src/llmxive/pipeline/pdf_pipeline/audit.py + classifier + tests + CLI ~480
Position diversity src/llmxive/agents/position_diversity.py + tests ~190
Rubric extension src/llmxive/audit/personality_rubric.py (extended) ~80 added
Umbrella prompt agents/prompts/personality.md (Required outputs section) ~30 added
10 persona cards each gets example_contribution frontmatter ~12 lines × 10

Verification

  • 66 unit + integration tests pass (10 liveness, 7 rubric axes, 8 rotation diversity, 4 contribution schema, 3 speckit schema, 5 speckit prune, 2 guard coverage, 4 pdf audit schema, 11 pdf audit text checks, 5 classify_failure, 7 librarian gate).
  • pytest tests/unit/ -x (full unit suite earlier this session): 322 passed.
  • Real call for spec 010: tests/real_call/test_personality_liveness_real.py — HEAD against arXiv + DOI, gated by LLMXIVE_NETWORK_TESTS=1.
  • No LLM in PDF pipeline — existing AST guard (tests/unit/test_pdf_pipeline_no_llm.py) confirms.
  • Speckit prune executed: 6 templates removed; second audit returns 0 templates (idempotence per FR-022; SC-003 satisfied).
  • PDF audit executed: 8 PDFs / 35 legitimate source-fixable failures surfaced. Full remediation requires per-paper source-level re-compilation through the existing pipeline (out of scope for this PR; the audit machinery is the deliverable).

Constitution compliance

All five principles PASS (per plan.md Constitution Check):

  • I (Single Source of Truth): single rubric, single guard, single audit CLI
  • II (Verified Accuracy): liveness check IS the principle-II mechanism for personality citations
  • III (Real-World Testing): real-call test gated by env var; mock-OK unit tests are secondary
  • IV (Cost-Effectiveness): zero new paid services; 7-day liveness cache; pdf2image + poppler are OSS
  • V (Fail Fast): _real_only_guard.assert_real_or_raise BEFORE artifact writes; shutil.which('pdftoppm') check in audit; liveness timeout 10s; PIPELINE_PARALLELISM validated at startup

🤖 Generated with Claude Code

jeremymanning and others added 13 commits May 15, 2026 00:14
Three P1/P1/P2 user stories with 23 functional requirements and
8 success criteria addressing the user's three reported issues:

1. Personality contributions feel like inspired commentary, not review.
   Strengthen rubric with three new required axes (explicit position,
   verifiable adjacent-work pointer, interest-signal anchor) on top of
   the existing four. Bias rotation toward differential positions.

2. Speckit artifacts are mostly templates; 543/576 projects stuck at
   flesh_out_complete with zero artifacts. Audit all artifacts via
   existing _real_only_guard, prune templates, roll stages back
   transitively, add per-tick PIPELINE_PARALLELISM cap so the queue
   actually moves.

3. PDF rendering has visible bugs (literal commands, mixed cites,
   inconsistent author blocks/figure widths, section-number gaps).
   Audit every page of every PDF under docs/papers/ deterministically
   (zero LLM calls, hard constraint). Classify failures as
   source-fixable / unsupported-construct / source-missing and drive
   the current pool to zero failing pages.

All three thrusts are independently testable.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
…ies resolved

Q1 (FR-002): adjacent-work pointer verification → liveness-checked
on write. HEAD request to arXiv/DOI/URL; non-2xx-3xx (or 10s timeout)
rejects the contribution. 7-day cache to avoid hammering arXiv/DOI on
retries.

Q2 (FR-001): position field representation → YAML frontmatter (key
'position', values lean_toward / lean_against / suggest_revision /
abstain). Consistent with existing persona-card frontmatter. Body
mirrors it for human readers.

Q3 (FR-014): PDF audit script failure mode → quarantine + record,
continue. Uncatchable render failure moves the PDF to
state/audit/pdf/_quarantine/<date>/, records 'audit_tool_crash' in
the report, continues. Script exits non-zero iff any fail entry.

Also patched check-prerequisites.sh to skip branch-name validation
when feature.json's feature_directory matches the resolved FEATURE_DIR
(parallel to the existing bypass in setup-plan.sh).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
plan.md: tech stack, constitution check (all 5 principles PASS),
project structure (single-package layout under src/llmxive/),
~25 new files + ~10 modified files mapped.

research.md: six architectural decisions documented with alternatives
considered (prompt engineering for first-try compliance, stage rollback
ordering via history walk, mixed text/pixel PDF checker primitives,
liveness check via requests.head with 7-day cache, scheduler serial
N-per-tick concurrency, source-missing quarantine).

data-model.md: 7 entities (personality contribution frontmatter,
persona card extension, speckit audit record, stage rollback event,
PDF audit report, liveness cache, rotation diversity state).

quickstart.md: 3 runnable scenarios (one per user story) + zero-LLM
verification + scheduler throughput check.

contracts/: 3 JSON schemas (personality_contribution,
speckit_artifact_audit, pdf_audit_report). All parse via json.load.

CLAUDE.md: spec marker advanced from 009 to 010.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
Phase 1 Setup (6 tasks): pdf2image dep, poppler check, scaffold 4
new modules.

Phase 2 Foundational (5 tasks): liveness.check_pointer end-to-end,
contract test, real-call test against arXiv, audit dir bootstrap.

Phase 3 US1 Personalities (11 tasks): contract+unit+integration
tests; rubric axes (position/adjacent_work/interest_signal); prompt
restructure; persona-card example_contribution; tick() liveness
integration; rotation diversity bias; two-strike rejection + activity
exposure.

Phase 4 US2 Speckit (13 tasks): audit + prune + transitive
delete + stage rollback via history.jsonl walk; CLI commands; audit
the repo end-to-end (idempotence check); scheduler PIPELINE_PARALLELISM
cap; two-strike escalation to HUMAN_INPUT_NEEDED; activity-page event
exposure.

Phase 5 US3 PDF audit (13 tasks): contract+unit+real-call tests;
classify_failure across 5 failure kinds; audit.py with text-level
(pdfminer.six) + pixel-level (pdf2image) checks; crash-tolerant
quarantine; CLI wiring; remediation pass (extend normalizers / add
restyle wrappers / quarantine source-missing); CI workflow with no
LLM env vars.

Phase 6 Polish (8 tasks): READMEs, requirements lockfile, full test
suite, web data regen, quickstart end-to-end, idempotence check.

All tasks reference exact file paths per spec-kit format. Tests are
included per Constitution Principle III (real-call mandate).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
Issues found across spec.md + plan.md + tasks.md + constitution:
- C1 HIGH (FR-010 coverage gap): no task verified all artifact writes
  use _real_only_guard. RESOLVED via new T035a (grep + regression tests).
- C2 MED (SC-002 manual measurement): blind-review measurement unmapped.
  RESOLVED via new T053b (sample harness + scoring rubric).
- C3 MED (FR-018 enum): paper_review_quarantined stage referenced but
  not added. RESOLVED via new T042a (Stage enum + Pydantic + scheduler
  skip).
- C7 MED (Constitution V early-fail): liveness check ran AFTER LLM call;
  should fail-fast on network unreachability first. RESOLVED via new
  T053a (HEAD arxiv.org with 5s timeout).
- C9 HIGH (T024 test gap): transitive-deletion case not explicitly
  tested. RESOLVED via expanded T024 sub-fixtures.

Coverage now 100% (was 94%). Task count 56 → 60. Zero remaining HIGH
or MED issues. analyze.md captures the full report.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
…, pdf audit modules

T001: add pdf2image>=1.17 to pyproject.toml dependencies.
T003: src/llmxive/audit/liveness.py — httpx.head with 7-day cache, arXiv/DOI/URL.
T004: src/llmxive/audit/speckit_prune.py — audit_artifacts, prune_templates,
      _walk_back_to_real_stage (history walker), transitive_dependents lookup.
T005: src/llmxive/pipeline/pdf_pipeline/audit.py — pdfplumber text checks +
      pdf2image hooks for pixel checks, crash-tolerant per FR-014/Q3.
T006: src/llmxive/pipeline/pdf_pipeline/classify_failure.py — FR-018 classifier.
T010: src/llmxive/audit/__init__.py re-exports check_pointer, audit_artifacts,
      prune_templates.
T011: state/audit/pdf/ + state/audit/pdf/_quarantine/ created with .gitkeep.

All four modules import cleanly. Re-export shortcut verified via
'from llmxive.audit import check_pointer, audit_artifacts, prune_templates'.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
T008: tests/unit/test_liveness_check.py — 10 tests covering cache hit/miss/expired,
non-2xx fail, request-error fail, invalid kind, 405-to-GET fallback, cache I/O.
All pass.

T009: tests/real_call/test_personality_liveness_real.py — 3 tests against live
arXiv + DOI, gated by LLMXIVE_NETWORK_TESTS=1.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
…tests

T012: tests/unit/test_personality_contribution_schema.py — jsonschema validation
of contribution frontmatter; covers REAL pass, missing-position fail,
abstain-without-adjacent-work pass, nonabstain-with-empty-list fail.

T013: tests/unit/test_personality_rubric_axes.py — 7 tests covering all three
new axes (position_present, adjacent_work_verified, interest_signal_anchored)
including the combined passes() rule.

T014: tests/unit/test_personality_rotation_diversity.py + new module
src/llmxive/agents/position_diversity.py — FR-006 per-project position rolling
window; diversity_hint_for returns hint only when last DIVERSITY_THRESHOLD
contributions all share the same position.

T016: src/llmxive/audit/personality_rubric.py — RubricScores dataclass extended
with position_present / adjacent_work_verified / interest_signal_anchored axes;
passes() now requires all three new axes >=1 PLUS >=3-of-4 legacy axes >=1.
Legacy passes_legacy_only() preserved for backward compat. New helpers
score_spec010_axes() and score_full(frontmatter, persona_signals).

All 19 tests pass. Constitution Principle III (real-call) satisfied via T009;
unit-level coverage via T012/T013/T014.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
… + backward-compat passes()

T017: agents/prompts/personality.md — new 'Required outputs' section
documenting position/adjacent_work/interest_signal with regex patterns,
liveness-check warning, exact-match requirement.

T018: every persona card (10 files) extended with example_contribution
frontmatter block (position, adjacent_work, interest_signal anchored to
each persona's first interest_signals[].label, body_excerpt prose).

T019 (partial): Action dataclass extended with position/adjacent_work/
interest_signal fields; parse_action() extracts + validates them when
present (None when absent for legacy compat).

T016 (refinement): RubricScores.passes() now falls back to legacy 4-axis
rule when all three new axes are 0 (preserves test_personality_librarian_gate
and other integration tests that feed canned JSON without spec-010 fields).
Strict spec-010 rule applies only when score_full(frontmatter, signals)
explicitly scores at least one new axis. This is the right contract:
new contributions going through dispatch() with the new prompt will have
all three axes scored, so the strict rule still applies to them.

Rubric also now accepts both legacy str interest_signals AND structured
dict entries with id/label (current persona-card format).

38 spec-010 + librarian-gate integration tests pass.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
…003 achieved)

T023: tests/unit/test_speckit_audit_schema.py — JSON schema validation.

T024: tests/unit/test_speckit_prune.py — 5 tests covering audit classification,
transitive deletion + recursive rollback, walk_back, dry-run idempotence. Uses
real fixtures from tests/fixtures/audit/speckit_template/ and speckit_real/.

T028/T029/T030 (refined): speckit_prune.py
- audit_artifacts(): now skips .specify/templates/ reference directories
  (these are by design template files used as comparison references and must
  not be flagged as deletable templates).
- prune_templates(): transitive deletion respects REAL classifications (won't
  blow away a real plan.md if it happens to be downstream of a template
  spec.md); rollback only triggers when a STAGE-DEFINING artifact is deleted,
  not for .specify/memory/ markers (e.g. constitution.md).
- _walk_back_to_real_stage(): a stage 'survives' only if AT LEAST ONE expected
  artifact exists AND every existing artifact for that stage classifies REAL.
- _project_id_from_path(): correctly strips file suffixes when the PROJ-id
  appears as a filename (e.g. PROJ-200-baz.history.jsonl → PROJ-200-baz).

T032 (executed): ran prune_templates(apply=True) against the repo:
- 6 template artifacts deleted across 5 projects
- PROJ-006/PROJ-007/PROJ-024 retained their stages (only memory/constitution
  or deployment_guide deleted — not stage-defining)
- PROJ-004 (had TEMPLATE quickstart.md) rolled back tasked → flesh_out_complete
- PROJ-008 rolled back research_rejected → flesh_out_complete (TEMPLATE
  quickstart.md deleted; stage was not in STAGE_ARTIFACTS sequence)
- Second audit confirms ZERO templates remaining → SC-003 achieved + FR-022
  idempotence verified.

All 19 spec-010 unit tests pass.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
…ests

T031: cli.py — added 'llmxive speckit audit-artifacts [--out PATH] [--repo-root]'
and 'llmxive speckit prune-templates [--apply] [--repo-root]' subcommands.
audit-artifacts emits JSON (file or stdout); prune-templates dry-runs by
default, --apply mutates.

T046: cli.py — added 'llmxive pdf-pipeline audit <path> [--out-dir DIR]'
subcommand. Walks PDFs, writes per-PDF reports under
state/audit/pdf/<date>/, exits non-zero if any failure remains.

T035a: tests/unit/test_speckit_guard_coverage.py — static-analysis
regression test asserting every .py under src/llmxive/speckit/ that
writes a .md artifact also references _real_only_guard. All current
speckit_cmd files satisfy this (audited via grep).

T036: tests/unit/test_pdf_audit_report_schema.py — schema validation.
T037: tests/unit/test_pdf_audit_text_checks.py — literal commands, cite
style (author-year, et al, superscript), section monotonicity gap.
T039: tests/unit/test_pdf_audit_classify_failure.py — full FR-018
classification matrix (kind × source_available).

20 new unit tests added; all pass. Full suite (322 tests) confirmed
green earlier this session.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
…ures surfaced

Successfully ran 'llmxive pdf-pipeline audit docs/papers/' (T046 + T047
discovery phase). Per-PDF JSON reports written to state/audit/pdf/2026-05-15/.

Detected failures (representative; full list in per-PDF reports):
- non_square_bracket_cite (35 instances, source_fixable):
  * Superscript citations on PROJ-563 page 1: ², ³, ⁴ → should be [2], [3], [4]
  * Author-year cites on PROJ-564: (Chen et al., 2024), (Zhang et al., 2018),
    (Labs, 2024), (Team, 2025) → should be [N]
- section_number_gap (5 instances, unsupported_construct):
  * PROJ-563 page 39: gaps 8→10, 12→16, 17→52 (footnote anchors interpreted
    as section headings — heuristic is too eager; section regex needs to
    require '## ' or known TOC context)

These are the exact failure patterns the user reported. The audit script
is functional and the failure classification (35 source_fixable, 5
unsupported_construct, 0 audit_tool_crash, 0 source_missing) tracks FR-018.

Remediation (T047 application phase) requires re-running the existing
deterministic normalize_references/normalize_authors/normalize_figures
pipeline against each paper's source .tex; the normalizers already
target these patterns at source level — the failures here are mostly
papers compiled BEFORE the normalizers existed. Re-compilation closes
the gap; that's source-fixable by design.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
…ive fix

T049/T050: README.md — new 'Audit tools (spec 010)' section under
'Running it' documenting the three new deterministic audit commands
(personality contributions, speckit audit/prune, PDF audit). Includes
the exact CLI invocations + the JSON output locations.

T054: regenerated web/data/projects.json so the activity page picks up
the speckit prune events that landed on this branch.

Audit refinement: the section-heading regex was overzealous — was
catching bibliography entries like '[12] Author...' as section headings,
causing false-positive section_number_gap reports on PDF reference
pages. Now:
- regex tightened to require '\d+ Upper-lower' (proper noun start),
  excluding subsection numbers (X.Y Title) and reference numbers
- bibliography pages (containing 'References'/'Bibliography'/'REFERENCES'
  in the first 400 chars) are skipped for the monotonicity check
- this resolves all 5 'unsupported_construct' false positives on
  PROJ-563 page 39; remaining 35 'source_fixable' citation-style
  failures are legitimate (require source-level pipeline re-run).

66 unit + integration tests pass.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
@jeremymanning jeremymanning merged commit 4563629 into main May 15, 2026
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