A library for applying flux balance constraint methods on SBML models. This code was developed within the scope of the BioPreDyn project.
This project uses (and distributes) LPsolve, a mixed integer linear programming solver published under the LGPL 2.0 license.
It requires libSBML to be installed with the FBC package (this means it has to be compiled, built and installed from source).
The library is built using CMake
Open a command prompt in the project checkout folder then type:
mkdir build
cd build
cmake ..
make
sudo make install
make test
It requires Microsoft Visual Studio to be installed. After SBML is installed (with FBC package), add the bin, lib and include folders from the SBML install directory to the PATH environment variable. Open a Visual Studio command prompt in the project checkout folder and type:
mkdir build
cd build
cmake -G "NMake Makefiles" ..
nmake install
ctest
They are activated by default; SWIG is required to
build them. Once libFBC is installed, its API can be used in any Python script or
shell after an import libfbc. On Linux, executing a ldconfig command
might be required before using the wrappers.
Wrappers can be de-activated by setting the CMake variable WITH_PYTHON
to OFF.
This project is distributed under the terms of the BSD-3 clause license:
Copyright (c) [2014-2017], Cosmo Tech All rights reserved.
Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
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Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
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Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
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Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.