CirclingDetection

Steps for running detection on existing tracking data CSV:

1. Copy the repository locally
2. Create an Anaconda environment (https://www.anaconda.com/products/distribution) from the included .yaml
3. Run Circling_BoxAngle.py either:
   • From the Anaconda prompt, type python Circling_BoxAngle.py after navigating to within the PathAnalysis folder
   • Using one of the development environments that can be downloaded from the Anaconda Navigator (e.g. Spyder)
   • If the CSV was generated by a tracking method other than DeepLabCut, note that it (or a copy of it) should be modified to place the snout keypoint (x,y) coordinates in columns 2 & 3 and the tail keypoint (x,y) coordinates in columns 5 & 6.