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Upgrade software dependencies 2026-05-11 (#8014)#8020

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dsotirho-ucsc wants to merge 12 commits into
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upgrades/2026-05-11
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Upgrade software dependencies 2026-05-11 (#8014)#8020
dsotirho-ucsc wants to merge 12 commits into
developfrom
upgrades/2026-05-11

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@dsotirho-ucsc dsotirho-ucsc commented May 13, 2026

Linked issue: #8014

Checklist

Author

  • PR is assigned to the author
  • Status of PR is In progress
  • Target branch is develop
  • Name of PR branch matches upgrades/yyyy-mm-dd
  • PR is linked to the upgrade issue it resolves
  • Status of linked issue is In progress
  • PR description links to linked issue
  • PR title matches Upgrade software dependencies yyyy-mm-dd
  • PR title references the linked issue

Author (upgrading deployments)

  • Ran make docker_images.json and committed the resulting changes or this PR does not modify azul_docker_images, or any other variables referenced in the definition of that variable
  • Documented upgrading of deployments in UPGRADING.rst or this PR does not require upgrading deployments
  • Added u tag to commit title or this PR does not require upgrading deployments
  • This PR is labeled upgrade or does not require upgrading deployments
  • This PR is labeled deploy:shared or does not modify docker_images.json, and does not require deploying the shared component for any other reason
  • This PR is labeled deploy:gitlab or does not require deploying the gitlab component
  • This PR is labeled backup:gitlab
  • This PR is labeled deploy:runner or does not require deploying the runner image

Author (before every review)

  • Rebased PR branch on develop, squashed fixups from prior reviews
  • Ran make requirements_update or this PR does not modify Dockerfile, environment, requirements*.txt, common.mk, Makefile or environment.boot
  • Added R tag to commit title or this PR does not modify requirements*.txt
  • This PR is labeled reqs or does not modify requirements*.txt
  • Updated the AL2023_release variable in gitlab.tf.json.template.py to the most recent AL2023 release or no update is available
  • make integration_test passes in personal deployment or this PR does not modify functionality that could affect the IT outcome
  • PR is not a draft
  • PR is awaiting requested review from system administrator
  • Status of PR is Review requested
  • PR is assigned to only the system administrator and the author

System administrator (after approval)

  • Actually approved the PR
  • Labeled linked issue as no demo
  • A comment to this PR details the completed security design review
  • PR title is appropriate as title of merge commit
  • N reviews label is accurate
  • Status of PR is Approved
  • PR is assigned to only the operator and the author

Operator

  • Squashed PR branch and rebased onto develop
  • Sanity-checked history
  • Pushed PR branch to GitHub

Operator (deploy .shared and .gitlab components)

  • Ran _select dev.shared && CI_COMMIT_REF_NAME=develop make -C terraform/shared apply_keep_unused or this PR is not labeled deploy:shared
  • Ran _select dev.gitlab && python scripts/create_gitlab_snapshot.py --no-restart (see operator manual for details) or this PR is not labeled backup:gitlab
  • Ran _select dev.gitlab && CI_COMMIT_REF_NAME=develop make -C terraform/gitlab apply or this PR is not labeled deploy:gitlab
  • Ran _select anvildev.shared && CI_COMMIT_REF_NAME=develop make -C terraform/shared apply_keep_unused or this PR is not labeled deploy:shared
  • Ran _select anvildev.gitlab && python scripts/create_gitlab_snapshot.py --no-restart (see operator manual for details) or this PR is not labeled backup:gitlab
  • Ran _select anvildev.gitlab && CI_COMMIT_REF_NAME=develop make -C terraform/gitlab apply or this PR is not labeled deploy:gitlab
  • Checked the items in the next section or this PR is labeled deploy:gitlab
  • PR is assigned to only the system administrator and the author or this PR is not labeled deploy:gitlab

System administrator (post-deploy of .gitlab component)

  • Background migrations for dev.gitlab are complete or this PR is not labeled deploy:gitlab
  • Background migrations for anvildev.gitlab are complete or this PR is not labeled deploy:gitlab
  • PR is assigned to only the operator and the author

Operator (deploy runner image)

  • Ran _select dev.gitlab && make -C terraform/gitlab/runner or this PR is not labeled deploy:runner
  • Ran _select anvildev.gitlab && make -C terraform/gitlab/runner or this PR is not labeled deploy:runner

Operator (sandbox build)

  • Added sandbox label
  • Pushed PR branch to GitLab dev
  • Pushed PR branch to GitLab anvildev
  • Build passes in sandbox deployment
  • Build passes in anvilbox deployment
  • Reviewed build logs for anomalies in sandbox deployment
  • Reviewed build logs for anomalies in anvilbox deployment

Operator (merge the branch)

  • All status checks passed and the PR is mergeable
  • The title of the merge commit starts with the title of this PR
  • Added PR # reference to merge commit title
  • Collected commit title tags in merge commit title but excluded any p tags
  • Closed related Dependabot PRs with a comment referencing the corresponding commit in this PR or this PR does not include any such commits
  • Pushed merge commit to GitHub
  • Status of PR is Merged lower
  • Status of blocked issues is Triage or no issues are blocked on the linked issue

Operator (main build)

  • Pushed merge commit to GitLab dev
  • Pushed merge commit to GitLab anvildev
  • Build passes on GitLab dev
  • Reviewed build logs for anomalies on GitLab dev
  • Build passes on GitLab anvildev
  • Reviewed build logs for anomalies on GitLab anvildev
  • Ran _select dev.shared && make -C terraform/shared apply or this PR is not labeled deploy:shared
  • Ran _select anvildev.shared && make -C terraform/shared apply or this PR is not labeled deploy:shared
  • Deleted PR branch from GitHub
  • PR is assigned to only the operator
  • Deleted PR branch from GitLab dev
  • Deleted PR branch from GitLab anvildev
  • Status of linked issue is Lower

Operator

  • At least 24 hours have passed since anvildev.shared was last deployed
  • Ran scripts/export_inspector_findings.py against anvildev, imported results to Google Sheet and posted screenshot of relevant1 findings as a comment on the linked issue.
  • Propagated the deploy:shared, deploy:gitlab, deploy:runner and backup:gitlab labels to the next promotion PRs or this PR carries none of these labels
  • Propagated any specific instructions related to the deploy:shared, deploy:gitlab, deploy:runner and backup:gitlab labels, from the description of this PR to that of the next promotion PRs or this PR carries none of these labels
  • PR is assigned to only the system administrator

1A relevant finding is a high or critical vulnerability in an image
that is used within the security boundary. Images not used within the boundary
are tracked in azul.docker_images under a key starting with _.

System administrator

  • No currently reported vulnerability requires immediate attention
  • PR is assigned to no one

Shorthand for review comments

  • L line is too long
  • W line wrapping is wrong
  • Q bad quotes
  • F other formatting problem

@dsotirho-ucsc dsotirho-ucsc self-assigned this May 13, 2026
@dsotirho-ucsc dsotirho-ucsc linked an issue May 13, 2026 that may be closed by this pull request
52 tasks
@dsotirho-ucsc dsotirho-ucsc added deploy:gitlab [process] PR requires deploying `gitlab` component deploy:shared [process] PR requires deploying `shared` component deploy:runner [process] PR requires deploying `runner` component backup:gitlab [process] PR requires backing up GitLab instances reqs [process] PR includes commit requiring ``make requirements`` labels May 13, 2026
@dsotirho-ucsc dsotirho-ucsc force-pushed the upgrades/2026-05-11 branch from d805aa6 to 36a53eb Compare May 13, 2026 22:15
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codecov Bot commented May 13, 2026

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 85.01%. Comparing base (2be7884) to head (40487d8).

Additional details and impacted files
@@           Coverage Diff            @@
##           develop    #8020   +/-   ##
========================================
  Coverage    85.01%   85.01%           
========================================
  Files          165      165           
  Lines        23678    23678           
========================================
  Hits         20131    20131           
  Misses        3547     3547           

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

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coveralls commented May 13, 2026

Coverage Status

coverage: 85.098%. remained the same — upgrades/2026-05-11 into develop

@dsotirho-ucsc dsotirho-ucsc force-pushed the upgrades/2026-05-11 branch from 36a53eb to 40487d8 Compare May 14, 2026 20:53
@dsotirho-ucsc
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8020_IT_2026-05-14.txt

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Labels

backup:gitlab [process] PR requires backing up GitLab instances deploy:gitlab [process] PR requires deploying `gitlab` component deploy:runner [process] PR requires deploying `runner` component deploy:shared [process] PR requires deploying `shared` component reqs [process] PR includes commit requiring ``make requirements``

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Upgrade software dependencies 2026-05-11

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