Fix: DeprecationWarning for datetime methods in Python 3.12 (#5953)#8023
Open
achave11-ucsc wants to merge 3 commits into
Open
Fix: DeprecationWarning for datetime methods in Python 3.12 (#5953)#8023achave11-ucsc wants to merge 3 commits into
achave11-ucsc wants to merge 3 commits into
Conversation
Codecov Report❌ Patch coverage is
Additional details and impacted files@@ Coverage Diff @@
## develop #8023 +/- ##
===========================================
+ Coverage 85.01% 85.06% +0.04%
===========================================
Files 165 165
Lines 23678 23649 -29
===========================================
- Hits 20131 20118 -13
+ Misses 3547 3531 -16 ☔ View full report in Codecov by Sentry. 🚀 New features to boost your workflow:
|
|
coverage: 85.147% (+0.05%) from 85.098% — issues/achave11-ucsc/5953-datetime-deprecation-2 into develop |
achave11-ucsc
force-pushed
the
issues/achave11-ucsc/5953-datetime-deprecation-2
branch
4 times, most recently
from
7f9a940 to
1fa7bcb
Compare
Member
Author
|
For removing the "!drop" commit, the paired changes in azul-chalice ought to be used for a new release, with tag version |
Member
Author
|
As @hannes-ucsc suggested in Slack, opensearch-py includes convenience methods for authenticating, and consolidating usages of urllib3 based clients also simplifies the logic and flow of our opensearch.py file. |
dsotirho-ucsc
requested changes
May 15, 2026
Contributor
dsotirho-ucsc
left a comment
dsotirho-ucsc
left a comment
There was a problem hiding this comment.
Index: test/azul_test_case.py
IDEA additional info:
Subsystem: com.intellij.openapi.diff.impl.patch.CharsetEP
<+>UTF-8
===================================================================
diff --git a/test/azul_test_case.py b/test/azul_test_case.py
--- a/test/azul_test_case.py (revision 1fa7bcb9b400ac6cdbf3407a6c21f7dbf8a2f3dd)
+++ b/test/azul_test_case.py (date 1778874933346)
@@ -148,10 +148,6 @@
'and will be removed in .*. Instead use .*'
),
- # FIXME: DeprecationWarning for datetime methods in Python 3.12
- # https://github.com/DataBiosphere/azul/issues/5953
- 'datetime.datetime.utcnow() is deprecated',
-
# FIXME: DeprecationWarning for patch_source_cache
# https://github.com/DataBiosphere/azul/issues/7838
'Instead of decorating your test case, or its test methods in '
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
achave11-ucsc
force-pushed
the
issues/achave11-ucsc/5953-datetime-deprecation-2
branch
from
1fa7bcb to
0d9ae09
Compare
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
4 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Linked issues: #5953
Checklist
Author
developissues/<GitHub handle of author>/<issue#>-<slug>1 when the issue title describes a problem, the corresponding PR
title is
Fix:followed by the issue titleAuthor (partiality)
ptag to titles of partial commitspartialor completely resolves all linked issuespartiallabelAuthor (reindex)
rtag to commit title or the changes introduced by this PR will not require reindexing of any deploymentreindex:devor the changes introduced by it will not require reindexing ofdevreindex:anvildevor the changes introduced by it will not require reindexing ofanvildevreindex:anvilprodor the changes introduced by it will not require reindexing ofanvilprodreindex:prodor the changes introduced by it will not require reindexing ofprodreindex:partialand its description documents the specific reindexing procedure fordev,anvildev,anvilprodandprodor requires a full reindex or carries none of the labelsreindex:dev,reindex:anvildev,reindex:anvilprodandreindex:prodAuthor (mirror)
mirror:devor the changes introduced by it will not require mirroring ofdevmirror:anvildevor the changes introduced by it will not require mirroring ofanvildevmirror:anvilprodor the changes introduced by it will not require mirroring ofanvilprodmirror:prodor the changes introduced by it will not require mirroring ofprodmirror:partialand its description documents the specific mirroring procedure fordev,anvildev,anvilprodandprodor requires a full mirroring or carries none of the labelsmirror:dev,mirror:anvildev,mirror:anvilprodandmirror:prodAuthor (API changes)
APIor this PR does not modify a REST APIa(A) tag to commit title for backwards (in)compatible changes or this PR does not modify a REST APIapp.pyor this PR does not modify a REST APIAuthor (upgrading deployments)
make docker_images.jsonand committed the resulting changes or this PR does not modifyazul_docker_images, or any other variables referenced in the definition of that variableutag to commit title or this PR does not require upgrading deploymentsupgradeor does not require upgrading deploymentsdeploy:sharedor does not modifydocker_images.json, and does not require deploying thesharedcomponent for any other reasondeploy:gitlabor does not require deploying thegitlabcomponentdeploy:runneror does not require deploying therunnerimageAuthor (hotfixes)
Ftag to main commit title or this PR does not include permanent fix for a temporary hotfixanvilprodandprod) have temporary hotfixes for any of the issues linked to this PRAuthor (before every review)
develop, squashed fixups from prior reviewsmake requirements_updateor this PR does not modifyDockerfile,environment,requirements*.txt,common.mk,Makefileorenvironment.bootRtag to commit title or this PR does not modifyrequirements*.txtreqsor does not modifyrequirements*.txtmake integration_testpasses in personal deployment or this PR does not modify functionality that could affect the IT outcomePeer reviewer (after approval)
Note that after requesting changes, the PR must be assigned to only the author.
System administrator (after approval)
demoorno demono demono sandboxN reviewslabel is accurateOperator
reindex:…labels andrcommit title tagmirror:…labelsno demodevelopOperator (deploy
.sharedand.gitlabcomponents)_select dev.shared && CI_COMMIT_REF_NAME=develop make -C terraform/shared apply_keep_unusedor this PR is not labeleddeploy:shared_select dev.gitlab && CI_COMMIT_REF_NAME=develop make -C terraform/gitlab applyor this PR is not labeleddeploy:gitlab_select anvildev.shared && CI_COMMIT_REF_NAME=develop make -C terraform/shared apply_keep_unusedor this PR is not labeleddeploy:shared_select anvildev.gitlab && CI_COMMIT_REF_NAME=develop make -C terraform/gitlab applyor this PR is not labeleddeploy:gitlabdeploy:gitlabdeploy:gitlabSystem administrator (post-deploy of
.gitlabcomponent)dev.gitlabare complete or this PR is not labeleddeploy:gitlabanvildev.gitlabare complete or this PR is not labeleddeploy:gitlabOperator (deploy runner image)
_select dev.gitlab && make -C terraform/gitlab/runneror this PR is not labeleddeploy:runner_select anvildev.gitlab && make -C terraform/gitlab/runneror this PR is not labeleddeploy:runnerOperator (sandbox build)
sandboxlabel or PR is labeledno sandboxdevor PR is labeledno sandboxanvildevor PR is labeledno sandboxsandboxdeployment or PR is labeledno sandboxanvilboxdeployment or PR is labeledno sandboxsandboxdeployment or PR is labeledno sandboxanvilboxdeployment or PR is labeledno sandboxsandboxor this PR does not remove catalogs or otherwise causes unreferenced indices insandboxanvilboxor this PR does not remove catalogs or otherwise causes unreferenced indices inanvilboxsandboxor this PR is not labeledreindex:devanvilboxor this PR is not labeledreindex:anvildevsandboxor this PR is not labeledreindex:devanvilboxor this PR is not labeledreindex:anvildevsandboxor this PR is not labeledmirror:devanvilboxor this PR is not labeledmirror:anvildevsandboxor this PR is not labeledmirror:devanvilboxor this PR is not labeledmirror:anvildevOperator (merge the branch)
pif the PR is also labeledpartialOperator (main build)
devanvildevdevdevanvildevanvildev_select dev.shared && make -C terraform/shared applyor this PR is not labeleddeploy:shared_select anvildev.shared && make -C terraform/shared applyor this PR is not labeleddeploy:shareddevanvildevOperator (reindex)
devor this PR is neither labeledreindex:partialnorreindex:devanvildevor this PR is neither labeledreindex:partialnorreindex:anvildevdevor this PR is neither labeledreindex:partialnorreindex:devanvildevor this PR is neither labeledreindex:partialnorreindex:anvildevdevor this PR is neither labeledreindex:partialnorreindex:devanvildevor this PR is neither labeledreindex:partialnorreindex:anvildevdevor this PR does not require reindexingdevanvildevor this PR does not require reindexinganvildevdevor this PR does not require reindexingdevanvildevor this PR does not require reindexinganvildevdevor this PR does not require reindexingdevanvildevor this PR does not require reindexinganvildevdevor this PR does not require reindexingdevdevor this PR does not require reindexingdevdeploy_browserjob in the GitLab pipeline for this PR indevor this PR does not require reindexingdevanvildevor this PR does not require reindexinganvildevdeploy_browserjob in the GitLab pipeline for this PR inanvildevor this PR does not require reindexinganvildevOperator (mirroring)
devor this PR is not labelledmirror:devanvildevor this PR is not labelledmirror:anvildevdevor this PR is not labelledmirror:devanvildevor this PR is not labelledmirror:anvildevdevor this PR is not labelledmirror:devanvildevor this PR is not labelledmirror:anvildevOperator
deploy:shared,deploy:gitlab,deploy:runner,API,reindex:partial,reindex:anvilprod,reindex:prod,mirror:partial,mirror:anvilprodandmirror:prodlabels to the next promotion PRs or this PR carries none of these labelsdeploy:shared,deploy:gitlab,deploy:runner,API,reindex:partial,reindex:anvilprod,reindex:prod,mirror:partial,mirror:anvilprodandmirror:prodlabels, from the description of this PR to that of the next promotion PRs or this PR carries none of these labelsShorthand for review comments
Lline is too longWline wrapping is wrongQbad quotesFother formatting problem