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1. fastq2fasta fastq2fasta Public

   converts fastq files to fasta files

   Python

2. GLIPH_cleaner GLIPH_cleaner Public

   This script takes the output of a GLIPH2 run and cleans up the output removing deadspace and 'single' unused sequences

   R

3. GLIPH_data_splitter GLIPH_data_splitter Public

   The output of cleaned GLIPH2 data is prepared for splitting data into two subcategories for analysis

   R

4. GLIPH_specificity_table GLIPH_specificity_table Public

   Using the split data from GLIPH creates an analysis table to analyze each clusters

   R

5. GLIPH_specificity_figure GLIPH_specificity_figure Public

   GLIPH_specificity_figure takes the specificity table and creates a correlation plot to visualize how closely related each motif is related in relation comparing two variables

   R

6. GLIPH_permutation GLIPH_permutation Public

   GLIPH_permutation provides a permutation analysis on the GLIPH motif clusters assigning a random assignment to each cluster to determine if the split in specificity is by random chance or not.

   R