GitHub - DavideGotta/TESI

Name	Name	Last commit message	Last commit date
Latest commit History 50 Commits
.idea	.idea
AggiuntaEvidenze.ipynb	AggiuntaEvidenze.ipynb
CCMEE29best_site.narrowPeak	CCMEE29best_site.narrowPeak
EstraiLexA_recA_uvrB_ssb.py	EstraiLexA_recA_uvrB_ssb.py
GOannotazione.py	GOannotazione.py
GOtools.ipynb	GOtools.ipynb
KEGG.html	KEGG.html
KEGG.ipynb	KEGG.ipynb
KEGG_enrichment.py	KEGG_enrichment.py
KEGGenrichment.ipynb	KEGGenrichment.ipynb
LOR.ipynb	LOR.ipynb
MotiviAnnotatatiGodivisi.pkl	MotiviAnnotatatiGodivisi.pkl
MotiviAnnotatatiGouniti.pkl	MotiviAnnotatatiGouniti.pkl
MotiviCCMEE29TuttiConScore.ipynb	MotiviCCMEE29TuttiConScore.ipynb
README.md	README.md
ScoreSMAnnotati.ipynb	ScoreSMAnnotati.ipynb
allko	allko
allko.txt	allko.txt
annotazioniGOkoCCMEE29.csv	annotazioniGOkoCCMEE29.csv
appstream.py	appstream.py
background_model.py	background_model.py
blastpChrovsAnabaena.py	blastpChrovsAnabaena.py
blastpproteinesimili.py	blastpproteinesimili.py
bprom_selenium.ipynb	bprom_selenium.ipynb
calculatestatisticsscores.py	calculatestatisticsscores.py
cercapattern.py	cercapattern.py
citationAPA.csl	citationAPA.csl
citationCELL.csl	citationCELL.csl
citationHarvard.csl	citationHarvard.csl
codoniinizio.py	codoniinizio.py
comparaScoreDavideAntonio.ipynb	comparaScoreDavideAntonio.ipynb
createdictionarycoding.ipynb	createdictionarycoding.ipynb
createdizintergeniche.py	createdizintergeniche.py
cropfasta.py	cropfasta.py
diz.pickle	diz.pickle
dizionariointergenicheortologhi.ipynb	dizionariointergenicheortologhi.ipynb
es.fasta	es.fasta
esempio.txt	esempio.txt
estraigeniconmotivi.py	estraigeniconmotivi.py
estraiproteineriparo.py	estraiproteineriparo.py
evidenzePCC6803PCC7120.ipynb	evidenzePCC6803PCC7120.ipynb
extractbesthits.py	extractbesthits.py
extractfgenesb.ipynb	extractfgenesb.ipynb
extractgenicsequences.py	extractgenicsequences.py
extractproteins.py	extractproteins.py
file.txt	file.txt
filtered	filtered
galactica.ipynb	galactica.ipynb
genifimo.txt	genifimo.txt
geniriparo.py	geniriparo.py
go-basic.obo	go-basic.obo
go_annotations.txt	go_annotations.txt
go_annotationsFIMO.txt	go_annotationsFIMO.txt
go_enrichment_fimo.ipynb	go_enrichment_fimo.ipynb
go_joiined.ipynb	go_joiined.ipynb
go_join.py	go_join.py
goea_nbt3102.ipynb	goea_nbt3102.ipynb
goea_nbt3102_all_study_genes.ipynb	goea_nbt3102_all_study_genes.ipynb
goea_nbt3102_fncs.ipynb	goea_nbt3102_fncs.ipynb
goea_nbt3102_group_results.ipynb	goea_nbt3102_group_results.ipynb
goenrichmentnew.ipynb	goenrichmentnew.ipynb
gspreadprova.py	gspreadprova.py
heterology_index.ipynb	heterology_index.ipynb
intergeniche.py	intergeniche.py
joinedmotiviegeniperoccorenze.py	joinedmotiviegeniperoccorenze.py
kegg.py	kegg.py
keras.ipynb	keras.ipynb
ko_enrichment.ipynb	ko_enrichment.ipynb
ko_enrichment_brite.ipynb	ko_enrichment_brite.ipynb
leggifileandblast.ipynb	leggifileandblast.ipynb
leggigenitrovati.py	leggigenitrovati.py
leggiscore.ipynb	leggiscore.ipynb
lexAproteins.py	lexAproteins.py
lor.py	lor.py
main.py	main.py
makeproteinblastdbgenomiChro.py	makeproteinblastdbgenomiChro.py
matrice.ipynb	matrice.ipynb
matricemotivicompletirefseq.ipynb	matricemotivicompletirefseq.ipynb
matrixfiìmo.py	matrixfiìmo.py
matrixmotivi.py	matrixmotivi.py
meme.py	meme.py
mergeannotations.ipynb	mergeannotations.ipynb
mmseq2.ipynb	mmseq2.ipynb
motif.png	motif.png
motiviChroEvidenze.ipynb	motiviChroEvidenze.ipynb
motiviPCC7120.ipynb	motiviPCC7120.ipynb
motiviccmee.ipynb	motiviccmee.ipynb
motivimemericerca.py	motivimemericerca.py
newstatisticsscores.py	newstatisticsscores.py
newstatisticsscoresmulti.py	newstatisticsscoresmulti.py
notebookfimo.ipynb	notebookfimo.ipynb
ok.py	ok.py
operoni.py	operoni.py
operoniCCMEE	operoniCCMEE
operoniscorestream.csv	operoniscorestream.csv
output.png	output.png
output.txt	output.txt
parseKEGG.py	parseKEGG.py
parseblastoutput.py	parseblastoutput.py
parseoperons.ipynb	parseoperons.ipynb

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Last commit message

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50 Commits

.idea

AggiuntaEvidenze.ipynb

CCMEE29best_site.narrowPeak

EstraiLexA_recA_uvrB_ssb.py