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Merged
merged 1,074 commits into from
May 2, 2021
Merged

rc1 #1208

merged 1,074 commits into from
May 2, 2021

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jeylau
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@jeylau jeylau commented Apr 30, 2021

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jeylau added 30 commits November 9, 2020 11:24
@jeylau
Store thresholds and best graph in configs
25abb4c
@jeylau
Merge branch 'master' into faster_assembly
e1341bc
@jeylau
200% faster extractstrongconnections
bdfbb47
@jeylau
Minor fixes and further speed gain
be14812
@jeylau
Use weighted likelihood for candidate connection
d01c1c0
@jeylau
Minor fixes
6d3db54
@jeylau
Add utility to rebuild uncropped predicted data
eb1a304
@jeylau
Rewrite link_joints_to_individuals
c7dbb7d
@jeylau
Smarter graph edge sorting
8dc7679
@jeylau
Handle bodyparts left unconnected
779a6af
@jeylau
Use complete PAF graph automatically
be91350
@jeylau
Recover train and test indices from cropped data
3fdda6d
@jeylau
Add data-driven skeleton selection
44cc2a8
@jeylau
Handle unlabeled bodyparts
cd4219e
@jeylau
Compute adjusted Rand index and clustering purity
4ca4d88
@jeylau
Some more improvements
ed60025
@jeylau
Store thresholds and best graph in configs
5a35bc9
@jeylau
Merge remote-tracking branch 'origin/faster_assembly' into faster_ass…
01ec282 
…embly
@jeylau
Handle array of detections with predicted identities
2a96570
@jeylau
Early stop if there are no detections
3a7f384
@jeylau
Fix dump to configs
fc1067a
@jeylau
Fix plotting during single animal network evaluation
4d7e8a9
@jeylau
Minor refactoring
1c8ccac
@jeylau
Find optimal smallest PAF graph
22a9f71
@jeylau
Clean up link_joints_to_individuals
d3c6af6
@jeylau
Minor improvements
ae670d6
@jeylau
Fix graph benchmarking with unique body parts
23f163d
@jeylau
Minor fixes and blackened code
e656d88
@jeylau
Minor fixes and blackened code
45b9ec1
@jeylau
Assemble single-object detections early
4b9dbd8
@jeylau jeylau requested review from AlexEMG and MMathisLab April 30, 2021 10:01
@jeylau jeylau closed this Apr 30, 2021
@jeylau jeylau deleted the rc1 branch April 30, 2021 10:24
@jeylau jeylau restored the rc1 branch April 30, 2021 12:53
@jeylau jeylau reopened this Apr 30, 2021
AlexEMG
AlexEMG reviewed Apr 30, 2021
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@AlexEMG AlexEMG left a comment

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I think we wanted to move the /test data elsewhere.

@MMathisLab MMathisLab mentioned this pull request May 1, 2021
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@AlexEMG AlexEMG merged commit da1c83d into master May 2, 2021
@jeylau jeylau deleted the rc1 branch May 3, 2021 07:41
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@AlexEMG AlexEMG AlexEMG approved these changes

@MMathisLab MMathisLab MMathisLab approved these changes

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@jeylau @AlexEMG @MMathisLab @zhoumu53