Got rid of wiki information that was defunct 2 or 3 releases ago. Got rid of all the old empty reader, writer, and AE pages. Got rid of _sidebar (todo). Need a lot of updated information - this has not been kept up to date as it was supposed to.
Updated Home (markdown)
Updated _Sidebar (markdown)
Updated Specifying and Interpreting outputs (markdown)
Updated Specifying and Interpreting_outputs (markdown)
Created Specifying and Interpreting_outputs (markdown)
Created Command Line Execution (markdown)
Updated Additional Output Files (markdown)
Updated Understanding DeepPhe Output (markdown)
Created Understanding DeepPhe Output (markdown)
Created Hl7Reader (markdown)
Created RegistryXmlReader (markdown)
Created RegistryXmlHandler (markdown)
Created NaaccrXmlFile (markdown)