Invert module structure

[MJGaughran]

No description provided.

[codecov]

Codecov Report

Attention: Patch coverage is 26.53061% with 36 lines in your changes missing coverage. Please review.

Project coverage is 48.53%. Comparing base (91ace36) to head (2f45816).
Report is 6 commits behind head on main.

Files with missing lines	Patch %	Lines
src/deploy_tools/remove_name_folders.py	30.00%	7 Missing ⚠️
src/deploy_tools/module.py	14.28%	6 Missing ⚠️
src/deploy_tools/apptainer.py	0.00%	5 Missing ⚠️
src/deploy_tools/remove.py	16.66%	5 Missing ⚠️
src/deploy_tools/layout.py	63.63%	4 Missing ⚠️
src/deploy_tools/validate.py	20.00%	4 Missing ⚠️
src/deploy_tools/command.py	0.00%	2 Missing ⚠️
src/deploy_tools/shell.py	0.00%	2 Missing ⚠️
src/deploy_tools/sync.py	0.00%	1 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main       #4      +/-   ##
==========================================
+ Coverage   48.23%   48.53%   +0.29%     
==========================================
  Files          27       27              
  Lines         709      715       +6     
==========================================
+ Hits          342      347       +5     
- Misses        367      368       +1     

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