Skip to content

Add optional normalisation to CoR sweep param schema #152

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
yousefmoazzam merged 1 commit into from
Apr 9, 2026
Merged

Add optional normalisation to CoR sweep param schema #152

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
124 changes: 119 additions & 5 deletions httomo/schemas/cor-sweep-param.json
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -242,6 +242,96 @@
"title": "SweepConfig",
"type": "object"
},
"TomopyMinusLogConfig": {
"description": "tomopy.prep.normalize.minus_log method config",
"properties": {
"method": {
"default": "minus_log",
"title": "Method",
"type": "string"
},
"module_path": {
"default": "tomopy.prep.normalize",
"title": "Module Path",
"type": "string"
},
"parameters": {
"$ref": "#/$defs/EmptyDict",
"default": {}
},
"save_result": {
"default": false,
"title": "Save Result",
"type": "boolean"
}
},
"title": "TomopyMinusLogConfig",
"type": "object"
},
"TomopyNormalizeConfig": {
"description": "tomopy.prep.normalize.normalize method config",
"properties": {
"method": {
"default": "normalize",
"title": "Method",
"type": "string"
},
"module_path": {
"default": "tomopy.prep.normalize",
"title": "Module Path",
"type": "string"
},
"parameters": {
"$ref": "#/$defs/TomopyNormalizeParams",
"default": {}
},
"save_result": {
"default": false,
"title": "Save Result",
"type": "boolean"
}
},
"title": "TomopyNormalizeConfig",
"type": "object"
},
"TomopyNormalizeParams": {
"description": "tomopy.prep.normalize.normalize parameters config",
"properties": {
"cutoff": {
"anyOf": [
{
"type": "number"
},
{
"type": "null"
}
],
"title": "Cutoff"
},
"averaging": {
"anyOf": [
{
"const": "mean",
"type": "string"
},
{
"const": "median",
"type": "string"
},
{
"type": "null"
}
],
"title": "Averaging"
}
},
"required": [
"cutoff",
"averaging"
],
"title": "TomopyNormalizeParams",
"type": "object"
},
"TomopyReconConfig": {
"description": "tomopy.recon.algorithm.recon method config",
"properties": {
Expand Down Expand Up @@ -324,14 +414,38 @@
}
},
"description": "An HTTomo center-of-rotation parameter sweep pipeline",
"maxItems": 2,
"minItems": 2,
"prefixItems": [
"anyOf": [
{
"$ref": "#/$defs/StandardTomoLoaderConfig"
"maxItems": 2,
"minItems": 2,
"prefixItems": [
{
"$ref": "#/$defs/StandardTomoLoaderConfig"
},
{
"$ref": "#/$defs/TomopyReconConfig"
}
],
"type": "array"
},
{
"$ref": "#/$defs/TomopyReconConfig"
"maxItems": 4,
"minItems": 4,
"prefixItems": [
{
"$ref": "#/$defs/StandardTomoLoaderConfig"
},
{
"$ref": "#/$defs/TomopyNormalizeConfig"
},
{
"$ref": "#/$defs/TomopyMinusLogConfig"
},
{
"$ref": "#/$defs/TomopyReconConfig"
}
],
"type": "array"
}
],
"title": "CorSweepPipeline",
Expand Down