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@tieneupin tieneupin commented Jun 24, 2024

Further work on issues raised in #304.

  • Replace spaces with underscores whenever comparing the file name to its name as stored in the metadata
  • Corrects LIF-to-TIFF zocalo cluster submission

… have their spaces removed as compared to their names in the metadata files, which breaks the string matching
@tieneupin tieneupin self-assigned this Jun 24, 2024
@tieneupin tieneupin added server Relates to the server component cryo-clem Part of the cryo-CLEM pipeline extension labels Jun 24, 2024
…ion warnings due to race condition when performing parallel processing
@tieneupin tieneupin linked an issue Jun 25, 2024 that may be closed by this pull request
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As of the time of this writing, with this patch, all issues associated with CLEM file transfer and automated image stack creation are resolved.

@tieneupin tieneupin requested a review from d-j-hatton June 25, 2024 10:57
@tieneupin tieneupin marked this pull request as ready for review June 25, 2024 10:58
@d-j-hatton d-j-hatton merged commit 0ba870b into main Jun 25, 2024
@d-j-hatton d-j-hatton deleted the clem-fixes branch June 25, 2024 13:52
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Issues with file transfer during CLEM workflow

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