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Removes the functions to extract the tilt series and tag from tomography files, and instead uses the existing _construct_tilt_series_name method.

All the tests passed, but it's likely this removes back-compatibility with older tomo versions and SerialEM.

Also changes the angle index determination to be match the function in cryoem-services

@stephen-riggs stephen-riggs self-assigned this Oct 18, 2024
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codecov bot commented Oct 18, 2024

Codecov Report

Attention: Patch coverage is 14.28571% with 6 lines in your changes missing coverage. Please review.

Project coverage is 28.62%. Comparing base (9620de5) to head (7684fbb).

Additional details and impacted files
@@            Coverage Diff             @@
##             main     #376      +/-   ##
==========================================
- Coverage   28.67%   28.62%   -0.05%     
==========================================
  Files          71       71              
  Lines        9604     9561      -43     
  Branches     1291     1284       -7     
==========================================
- Hits         2754     2737      -17     
+ Misses       6751     6725      -26     
  Partials       99       99              

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@d-j-hatton d-j-hatton left a comment

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If the linters didn't pick up any stray references to the removed attributes then seems fine, thanks

@stephen-riggs stephen-riggs merged commit b386ee7 into main Oct 18, 2024
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@stephen-riggs stephen-riggs deleted the tilt_angle_fix branch October 18, 2024 14:34
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3 participants