SmartEM integration for the EPU context#772
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d-j-hatton merged 13 commits intomainfrom Apr 1, 2026
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bit of a stopgap, hopefully come up with better integration at a later date
… to the data collection group registration where a smartem grid will also be registered this commit is just the client side
… makes a smartem micrograph, ignoring metadata for now) paths for grid and atlas may need sorting out
…rations in murfey
at the moment this does the publish directly, possibly need to move that to some kind of API call later to keep the interface surface small
…n to do smartem registration
…uare positions have been registered
…tion to trigger quality predictions, and add smartem gridsquare registration after foil holes have been registered on a square
Codecov Report❌ Patch coverage is Additional details and impacted files@@ Coverage Diff @@
## main #772 +/- ##
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- Coverage 49.29% 48.81% -0.49%
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Files 92 94 +2
Lines 9818 10503 +685
Branches 1296 1480 +184
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+ Hits 4840 5127 +287
- Misses 4728 5082 +354
- Partials 250 294 +44 🚀 New features to boost your workflow:
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stephen-riggs
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Apr 1, 2026
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stephen-riggs
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I'm not sure if this works but it looks safe and won't break existing features
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Not fully tested for robustness against different metadata file sequences but designed to not interfere with current capabilities