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Add sxt router and rename recipe #795

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Merged
stephen-riggs merged 2 commits into from
Apr 30, 2026
Merged

Add sxt router and rename recipe #795

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c004aa2
Add sxt router and rename recipe
stephen-riggs Apr 30, 2026
cd5a03b
Update tests
stephen-riggs Apr 30, 2026
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2 changes: 1 addition & 1 deletion src/murfey/client/contexts/sxt.py
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Original file line number Diff line number Diff line change
Expand Up @@ -85,7 +85,7 @@ def register_sxt_data_collection(
)

recipes_to_assign_pjids = [
"sxt-tomo-align",
"sxt-aretomo",
]
for recipe in recipes_to_assign_pjids:
capture_post(
Expand Down
1 change: 1 addition & 0 deletions src/murfey/server/main.py
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Expand Up @@ -96,6 +96,7 @@ class Settings(BaseSettings):
app.include_router(murfey.server.api.workflow.router)
app.include_router(murfey.server.api.workflow.correlative_router)
app.include_router(murfey.server.api.workflow.spa_router)
app.include_router(murfey.server.api.workflow.sxt_router)
app.include_router(murfey.server.api.workflow.tomo_router)
app.include_router(murfey.server.api.clem.router)
app.include_router(murfey.server.api.workflow_fib.router)
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4 changes: 2 additions & 2 deletions src/murfey/workflows/sxt/process_sxt_tilt_series.py
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Expand Up @@ -64,7 +64,7 @@ def process_sxt_tilt_series_workflow(
.where(DataCollection.dcg_id == DataCollectionGroup.id)
.where(ProcessingJob.dc_id == DataCollection.id)
.where(AutoProcProgram.pj_id == ProcessingJob.id)
.where(ProcessingJob.recipe == "sxt-tomo-align")
.where(ProcessingJob.recipe == "sxt-aretomo")
).one()
instrument_name = (
murfey_db.exec(select(Session).where(Session.id == session_id))
Expand Down Expand Up @@ -93,7 +93,7 @@ def process_sxt_tilt_series_workflow(
)
stack_file.parent.mkdir(parents=True, exist_ok=True)
zocalo_message = {
"recipes": ["sxt-tomo-align"],
"recipes": ["sxt-aretomo"],
"parameters": {
"txrm_file": tilt_series_info.txrm,
"dcid": collected_ids[1].id,
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2 changes: 1 addition & 1 deletion tests/client/contexts/test_sxt.py
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Original file line number Diff line number Diff line change
Expand Up @@ -107,7 +107,7 @@ def test_sxt_context_txrm(
json={
"tag": "example",
"source": str(tmp_path),
"recipe": "sxt-tomo-align",
"recipe": "sxt-aretomo",
"experiment_type": "sxt",
},
headers={"Authorization": "Bearer "},
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4 changes: 2 additions & 2 deletions tests/workflows/sxt/test_process_sxt_tilt_series.py
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Expand Up @@ -38,7 +38,7 @@ def set_up_db(murfey_db_session: Session):
ProcessingJob,
lookup_kwargs={
"id": 1,
"recipe": "sxt-tomo-align",
"recipe": "sxt-aretomo",
"dc_id": dc_entry.id,
},
)
Expand Down Expand Up @@ -92,7 +92,7 @@ def test_process_new_sxt_tilt_series(
"manual_tilt_offset": -1,
"node_creator_queue": "node_creator",
},
"recipes": ["sxt-tomo-align"],
"recipes": ["sxt-aretomo"],
},
new_connection=True,
)
Expand Down
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