Snakemake-based Pipeline Integration

alinatroglio released this 19 May 11:18

· 5 commits to main since this release

b914370

Switched from Jupyter-only to a structured Snakemake pipeline
Added config.yaml support for dataset and parameter management
Modularized processing scripts under scripts/
Exported reproducible environment.yml for Conda
Included test dataset and output structure

Assets 2