Better support for integer indices, validation checks, improved sum, … #3
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…faster file creation on some platforms... plus some whitespace changes...
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Sorry I made a mess of this pull request stuff. First time! I deleted my old fork and made new one (this is it). |
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Hi @marcsous, I've incorporated nearly all the changes. I rewrote |
DylanMuir
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May 25, 2016
9e73c53 * Added a flag to force `TIFFStack` to use slower `tiffread` library, if desired * Fixed a bug where linear indexing would not be range checked as early as possible * Fixed a bug in `tiffread` support * Improved unit testing to only require a [3x3x3] stack * Added unit tests for empty subreferences * Added unit tests for slower `tiffread` library support cc5539f Documentation fix. Added `.gitignore` to repository f77a0d4 Merge pull request #3 from jennan/pr/2 4768eea Fixed bug with deinterleaving + permutation + slicing 6ddc0d9 Added documentation regarding the de-interleaving functionality. 2ae0dd5 * Renamed de-interleaving argument * Improved parameter checking for de-interleaving argument * Re-allowed de-interleaving argument to leave off final frames, similar to `reshape` f011b6f Bugfixes and improvements related to de-interleaving e692bef Merge branch 'master' into pr/2 a32b839 Unit test now includes logical indexing 7a8a065 Merge branch 'master' into pr/2 356d33a * Added a unit testing function for `TIFFStack` * Added property accessor methods to `TIFFStack`, since otherwise properties were inaccessible * Fixed a bug when referencing inverted stacks with multiple samples per pixel * Fixed a referencing bug, where out of range subscripts would not raise an error, if fewer dimensions than the total were referenced * Modified an error identifier 36ad2ad Add special case with colon indexing of reinterpreted frame dimension 69e1360 Fix consistency in error style (CamelCase) 3251086 Move deinterleaving in the constructor, fixed for a TIFFStack db994c7 Add deinterleaving method to reinterpret the frame dim as several dims 65c1a85 Fixed a referencing bug in `TIFFStack` 7362e2c Speed improvements to `TIFFStack` 92e4244 Fixed bugs relating to data returned by linear indexing having a different shape to the index vector. 1742646 Fixed a bug in `TIFFStack`, when referencing a stack with trailing dimensions of `1` ce7e820 * `TIFFStack` can now read an entire stack in an accelerated fashion, with any number of referencing dimensions a6abdfe Fixed a bug in `TIFFStack`, which caused a warning "Closing open TIFF file handle..." when clearing variables. 07bd9d5 Fixed a bug in `TIFFStack` on older systems, where referencing frame 1 of the stack would fail. 6504550 Made `fhCastFunction` a private `TIFFStack` property 13fa2f9 Added information to `TIFFStack` about disabling `tifflib` warnings. e940e75 Fixed a bug in `TIFFStack`, where if the stack data class was an integer type, then stack data inversion would fail with an error. ae27a64 `TIFFStack` now supports logical indexing. git-subtree-dir: @tiffstack git-subtree-split: 9e73c533a09782ad7f103157e02a0f5b40120806
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…faster file creation on some platforms, fixed complex assign bug... plus some whitespace changes...