{2025.06}[2024a] R-bundle-Bioconductor 3.20 #1299

ocaisa · 2025-11-13T12:46:47Z

5 out of 167 required modules missing:

* RapidJSON/1.1.0-20240815-GCCcore-13.3.0 (RapidJSON-1.1.0-20240815-GCCcore-13.3.0.eb)
* utf8proc/2.9.0-GCCcore-13.3.0 (utf8proc-2.9.0-GCCcore-13.3.0.eb)
* Arrow/17.0.0-gfbf-2024a (Arrow-17.0.0-gfbf-2024a.eb)
* arrow-R/17.0.0.1-foss-2024a-R-4.4.2 (arrow-R-17.0.0.1-foss-2024a-R-4.4.2.eb)
* R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2 (R-bundle-Bioconductor-3.20-foss-2024a-R-4.4.2.eb)

ocaisa · 2025-11-13T12:53:14Z

bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=x86_64/amd/zen2
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-deucalion for:arch=aarch64/a64fx
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-jsc for:arch=aarch64/nvidia/grace

eessi-bot-aws · 2025-11-13T12:53:21Z

New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: amd-zen2
Building for: x86_64/amd/zen2
Job dir: /project/def-users/SHARED/jobs/2025.11/pr_1299/104198

date	job status	comment
Nov 13 12:53:20 UTC 2025	submitted	job id `104198` awaits release by job manager
Nov 13 12:53:43 UTC 2025	released	job awaits launch by Slurm scheduler
Nov 13 12:59:50 UTC 2025	running	job `104198` is running
Nov 13 15:41:24 UTC 2025	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-104198.out` ✅ no message matching `FATAL:` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-x86_64-amd-zen2-17630477770.tar.zst` size: 39 MiB (41388523 bytes) entries: 1638 modules under 2025.06/software/linux/x86_64/amd/zen2/modules/all `Arrow/17.0.0-gfbf-2024a.lua` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2.lua` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0.lua` `utf8proc/2.9.0-GCCcore-13.3.0.lua` software under 2025.06/software/linux/x86_64/amd/zen2/software `Arrow/17.0.0-gfbf-2024a` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0` `utf8proc/2.9.0-GCCcore-13.3.0` reprod directories under 2025.06/software/linux/x86_64/amd/zen2/reprod `Arrow/17.0.0-gfbf-2024a/20251113_132512UTC` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2/20251113_133139UTC` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0/20251113_130114UTC` `utf8proc/2.9.0-GCCcore-13.3.0/20251113_130137UTC` other under 2025.06/software/linux/x86_64/amd/zen2 no other files in tarball
Nov 13 15:41:24 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] (1/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /e4bf9965 @BotBuildTests:x86_64_amd_zen2+default P: latency: 1.44 us (r:0, l:None, u:None) [ OK ] (2/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /3da4890b @BotBuildTests:x86_64_amd_zen2+default P: latency: 2.04 us (r:0, l:None, u:None) [ OK ] (3/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /3255009a @BotBuildTests:x86_64_amd_zen2+default P: latency: 0.19 us (r:0, l:None, u:None) [ OK ] (4/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /59f4b331 @BotBuildTests:x86_64_amd_zen2+default P: bandwidth: 7961.46 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-104198.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

eessi-bot-deucalion · 2025-11-13T12:53:23Z

New job on instance eessi-bot-deucalion for repository eessi.io-2025.06-software
Building on: a64fx
Building for: aarch64/a64fx
Job dir: /home/eessibot/new-bot/jobs/2025.11/pr_1299/682108

date	job status	comment
Nov 13 12:53:22 UTC 2025	submitted	job id `682108` awaits release by job manager
Nov 13 12:53:52 UTC 2025	released	job awaits launch by Slurm scheduler
Nov 13 12:54:55 UTC 2025	running	job `682108` is running
Nov 13 16:50:00 UTC 2025	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-682108.out` ✅ no message matching `FATAL:` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-aarch64-a64fx-17630522820.tar.zst` size: 36 MiB (38665692 bytes) entries: 1637 modules under 2025.06/software/linux/aarch64/a64fx/modules/all `Arrow/17.0.0-gfbf-2024a.lua` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0.lua` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2.lua` `utf8proc/2.9.0-GCCcore-13.3.0.lua` software under 2025.06/software/linux/aarch64/a64fx/software `Arrow/17.0.0-gfbf-2024a` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2` `utf8proc/2.9.0-GCCcore-13.3.0` reprod directories under 2025.06/software/linux/aarch64/a64fx/reprod `Arrow/17.0.0-gfbf-2024a/20251113_140156UTC` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0/20251113_125930UTC` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2/20251113_142009UTC` `utf8proc/2.9.0-GCCcore-13.3.0/20251113_130015UTC` other under 2025.06/software/linux/aarch64/a64fx no other files in tarball
Nov 13 16:50:00 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ SKIP ] (1/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /e4bf9965 @BotBuildTests:aarch64_a64fx+default [Skipping test: nodes in this partition only have 30720 MiB memory available (per node) according to the current ReFrame configuration, but 49152 MiB is needed] [ SKIP ] (2/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /3da4890b @BotBuildTests:aarch64_a64fx+default [Skipping test: nodes in this partition only have 30720 MiB memory available (per node) according to the current ReFrame configuration, but 49152 MiB is needed] [ OK ] (3/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /3255009a @BotBuildTests:aarch64_a64fx+default P: latency: 0.88 us (r:0, l:None, u:None) [ OK ] (4/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /59f4b331 @BotBuildTests:aarch64_a64fx+default P: bandwidth: 7908.18 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 2/4 test case(s) from 4 check(s) (0 failure(s), 2 skipped, 0 aborted) Details ✅ job output file `slurm-682108.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

eessi-bot-jsc · 2025-11-13T12:53:24Z

New job on instance eessi-bot-jsc for repository eessi.io-2025.06-software
Building on: nvidia-grace
Building for: aarch64/nvidia/grace
Job dir: /p/project1/ceasybuilders/eessibot/jobs/2025.11/pr_1299/14211788

date	job status	comment
Nov 13 12:53:22 UTC 2025	submitted	job id `14211788` awaits release by job manager
Nov 13 12:53:30 UTC 2025	released	job awaits launch by Slurm scheduler
Nov 13 12:54:33 UTC 2025	running	job `14211788` is running
Nov 13 14:20:04 UTC 2025	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-14211788.out` ✅ no message matching `FATAL:` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-aarch64-nvidia-grace-17630426690.tar.gz` size: 41 MiB (43038113 bytes) entries: 1638 modules under 2025.06/software/linux/aarch64/nvidia/grace/modules/all `Arrow/17.0.0-gfbf-2024a.lua` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2.lua` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0.lua` `utf8proc/2.9.0-GCCcore-13.3.0.lua` software under 2025.06/software/linux/aarch64/nvidia/grace/software `Arrow/17.0.0-gfbf-2024a` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0` `utf8proc/2.9.0-GCCcore-13.3.0` reprod directories under 2025.06/software/linux/aarch64/nvidia/grace/reprod `Arrow/17.0.0-gfbf-2024a/20251113_131055UTC` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2/20251113_131409UTC` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0/20251113_125639UTC` `utf8proc/2.9.0-GCCcore-13.3.0/20251113_125731UTC` other under 2025.06/software/linux/aarch64/nvidia/grace no other files in tarball
Nov 13 14:20:04 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] (1/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /e4bf9965 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 2.48 us (r:0, l:None, u:None) [ OK ] (2/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /3da4890b @BotBuildTests:aarch64_nvidia_grace+default P: latency: 6.08 us (r:0, l:None, u:None) [ OK ] (3/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /3255009a @BotBuildTests:aarch64_nvidia_grace+default P: latency: 0.26 us (r:0, l:None, u:None) [ OK ] (4/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /59f4b331 @BotBuildTests:aarch64_nvidia_grace+default P: bandwidth: 23566.43 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-14211788.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

ocaisa · 2025-11-13T14:43:36Z

Hmm, I'm a bit lost on this one:

../../libtool: line 3232: cd: =/cvmfs/software.eessi.io/versions/2025.06/software/linux/aarch64/nvidia/grace/software/UCX/1.16.0-GCCcore-13.3.0/lib: No such f
ile or directory
libtool: link: warning: cannot determine absolute directory name of `=/cvmfs/software.eessi.io/versions/2025.06/software/linux/aarch64/nvidia/grace/software/U
CX/1.16.0-GCCcore-13.3.0/lib'
grep: =/cvmfs/software.eessi.io/versions/2025.06/software/linux/aarch64/nvidia/grace/software/UCX/1.16.0-GCCcore-13.3.0/lib/libuct.la: No such file or directo
ry
/cvmfs/software.eessi.io/versions/2025.06/compat/linux/aarch64/bin/sed: can't read =/cvmfs/software.eessi.io/versions/2025.06/software/linux/aarch64/nvidia/gr
ace/software/UCX/1.16.0-GCCcore-13.3.0/lib/libuct.la: No such file or directory
libtool: link: `=/cvmfs/software.eessi.io/versions/2025.06/software/linux/aarch64/nvidia/grace/software/UCX/1.16.0-GCCcore-13.3.0/lib/libuct.la' is not a vali
d libtool archive
make[5]: *** [Makefile:504: libCgl.la] Error 1
make[5]: Leaving directory '/tmp/eessibot/easybuild/build/RbundleBioconductor/3.20/foss-2024a-R-4.4.2/lpsymphony/lpsymphony/src/SYMPHONY/Cgl/src'
make[4]: *** [Makefile:573: all-recursive] Error 1
make[4]: Leaving directory '/tmp/eessibot/easybuild/build/RbundleBioconductor/3.20/foss-2024a-R-4.4.2/lpsymphony/lpsymphony/src/SYMPHONY/Cgl/src'
make[3]: *** [Makefile:416: all] Error 2
make[3]: Leaving directory '/tmp/eessibot/easybuild/build/RbundleBioconductor/3.20/foss-2024a-R-4.4.2/lpsymphony/lpsymphony/src/SYMPHONY/Cgl/src'
make[2]: *** [Makefile:480: all-recursive] Error 1
make[2]: Leaving directory '/tmp/eessibot/easybuild/build/RbundleBioconductor/3.20/foss-2024a-R-4.4.2/lpsymphony/lpsymphony/src/SYMPHONY/Cgl'
make[1]: *** [Makefile:324: all-recursive] Error 1
make[1]: Leaving directory '/tmp/eessibot/easybuild/build/RbundleBioconductor/3.20/foss-2024a-R-4.4.2/lpsymphony/lpsymphony/src/SYMPHONY'
make: *** [Makevars:14: SYMPHONY.ts] Error 2
ERROR: compilation failed for package ‘lpsymphony’

The directory name obviously shouldn't have the = at the front...but I have no idea where it is coming from.

boegel · 2025-11-13T14:56:57Z

@ocaisa Doesn't really seem related, but lpsymphony has been a PITA before, maybe there's a hint in easybuilders/easybuild-easyconfigs#11104

I'd say try to reproduce, just into cmd.sh shell to start poking around?
You'll need to use --disable-parallel-extensions-install for that probably...

ocaisa · 2025-11-21T13:24:17Z

bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=x86_64/amd/zen2
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-deucalion for:arch=aarch64/a64fx
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-jsc for:arch=aarch64/nvidia/grace

eessi-bot-aws · 2025-11-21T13:24:24Z

New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: amd-zen2
Building for: x86_64/amd/zen2
Job dir: /project/def-users/SHARED/jobs/2025.11/pr_1299/106597

date	job status	comment
Nov 21 13:24:23 UTC 2025	submitted	job id `106597` awaits release by job manager
Nov 21 13:25:07 UTC 2025	released	job awaits launch by Slurm scheduler
Nov 21 13:31:20 UTC 2025	running	job `106597` is running
Nov 21 16:51:23 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-106597.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-x86_64-amd-zen2-17637435490.tar.zst` size: 7351 MiB (7708593012 bytes) entries: 27632 modules under 2025.06/software/linux/x86_64/amd/zen2/modules/all `Arrow/17.0.0-gfbf-2024a.lua` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2.lua` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0.lua` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2.lua` `utf8proc/2.9.0-GCCcore-13.3.0.lua` software under 2025.06/software/linux/x86_64/amd/zen2/software `Arrow/17.0.0-gfbf-2024a` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2` `utf8proc/2.9.0-GCCcore-13.3.0` reprod directories under 2025.06/software/linux/x86_64/amd/zen2/reprod `Arrow/17.0.0-gfbf-2024a/20251121_135109UTC` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2/20251121_135747UTC` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0/20251121_133200UTC` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2/20251121_164143UTC` `utf8proc/2.9.0-GCCcore-13.3.0/20251121_133224UTC` other under 2025.06/software/linux/x86_64/amd/zen2 no other files in tarball
Nov 21 16:51:23 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] (1/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /e4bf9965 @BotBuildTests:x86_64_amd_zen2+default P: latency: 1.38 us (r:0, l:None, u:None) [ OK ] (2/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /3da4890b @BotBuildTests:x86_64_amd_zen2+default P: latency: 2.16 us (r:0, l:None, u:None) [ OK ] (3/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /3255009a @BotBuildTests:x86_64_amd_zen2+default P: latency: 0.18 us (r:0, l:None, u:None) [ OK ] (4/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /59f4b331 @BotBuildTests:x86_64_amd_zen2+default P: bandwidth: 7545.23 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-106597.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Nov 21 22:24:43 UTC 2025	uploaded	transfer of `eessi-2025.06-software-linux-x86_64-amd-zen2-17637435490.tar.zst` to S3 bucket succeeded

eessi-bot-deucalion · 2025-11-21T13:24:27Z

New job on instance eessi-bot-deucalion for repository eessi.io-2025.06-software
Building on: a64fx
Building for: aarch64/a64fx
Job dir: /home/eessibot/new-bot/jobs/2025.11/pr_1299/691038

date	job status	comment
Nov 21 13:24:25 UTC 2025	submitted	job id `691038` awaits release by job manager
Nov 21 13:24:36 UTC 2025	released	job awaits launch by Slurm scheduler
Nov 21 13:25:41 UTC 2025	running	job `691038` is running
Nov 21 19:47:18 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-691038.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-aarch64-a64fx-17637539670.tar.zst` size: 7243 MiB (7595256104 bytes) entries: 27631 modules under 2025.06/software/linux/aarch64/a64fx/modules/all `Arrow/17.0.0-gfbf-2024a.lua` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2.lua` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0.lua` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2.lua` `utf8proc/2.9.0-GCCcore-13.3.0.lua` software under 2025.06/software/linux/aarch64/a64fx/software `Arrow/17.0.0-gfbf-2024a` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2` `utf8proc/2.9.0-GCCcore-13.3.0` reprod directories under 2025.06/software/linux/aarch64/a64fx/reprod `Arrow/17.0.0-gfbf-2024a/20251121_142729UTC` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2/20251121_193055UTC` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0/20251121_133022UTC` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2/20251121_144616UTC` `utf8proc/2.9.0-GCCcore-13.3.0/20251121_133109UTC` other under 2025.06/software/linux/aarch64/a64fx no other files in tarball
Nov 21 19:47:18 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ SKIP ] (1/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /e4bf9965 @BotBuildTests:aarch64_a64fx+default [Skipping test: nodes in this partition only have 30720 MiB memory available (per node) according to the current ReFrame configuration, but 49152 MiB is needed] [ SKIP ] (2/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /3da4890b @BotBuildTests:aarch64_a64fx+default [Skipping test: nodes in this partition only have 30720 MiB memory available (per node) according to the current ReFrame configuration, but 49152 MiB is needed] [ OK ] (3/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /3255009a @BotBuildTests:aarch64_a64fx+default P: latency: 0.88 us (r:0, l:None, u:None) [ OK ] (4/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /59f4b331 @BotBuildTests:aarch64_a64fx+default P: bandwidth: 7889.74 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 2/4 test case(s) from 4 check(s) (0 failure(s), 2 skipped, 0 aborted) Details ✅ job output file `slurm-691038.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Nov 21 22:23:54 UTC 2025	uploaded	transfer of `eessi-2025.06-software-linux-aarch64-a64fx-17637539670.tar.zst` to S3 bucket succeeded

eessi-bot-jsc · 2025-11-21T13:24:28Z

New job on instance eessi-bot-jsc for repository eessi.io-2025.06-software
Building on: nvidia-grace
Building for: aarch64/nvidia/grace
Job dir: /p/project1/ceasybuilders/eessibot/jobs/2025.11/pr_1299/14242462

date	job status	comment
Nov 21 13:24:26 UTC 2025	submitted	job id `14242462` awaits release by job manager
Nov 21 13:24:33 UTC 2025	released	job awaits launch by Slurm scheduler
Nov 21 13:25:37 UTC 2025	running	job `14242462` is running
Nov 21 15:14:57 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-14242462.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-aarch64-nvidia-grace-17637366940.tar.gz` size: 7373 MiB (7731672912 bytes) entries: 27632 modules under 2025.06/software/linux/aarch64/nvidia/grace/modules/all `Arrow/17.0.0-gfbf-2024a.lua` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2.lua` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0.lua` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2.lua` `utf8proc/2.9.0-GCCcore-13.3.0.lua` software under 2025.06/software/linux/aarch64/nvidia/grace/software `Arrow/17.0.0-gfbf-2024a` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2` `utf8proc/2.9.0-GCCcore-13.3.0` reprod directories under 2025.06/software/linux/aarch64/nvidia/grace/reprod `Arrow/17.0.0-gfbf-2024a/20251121_134012UTC` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2/20251121_134327UTC` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0/20251121_132807UTC` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2/20251121_144421UTC` `utf8proc/2.9.0-GCCcore-13.3.0/20251121_132935UTC` other under 2025.06/software/linux/aarch64/nvidia/grace no other files in tarball
Nov 21 15:14:57 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] (1/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /e4bf9965 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 2.51 us (r:0, l:None, u:None) [ OK ] (2/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /3da4890b @BotBuildTests:aarch64_nvidia_grace+default P: latency: 6.28 us (r:0, l:None, u:None) [ OK ] (3/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /3255009a @BotBuildTests:aarch64_nvidia_grace+default P: latency: 0.25 us (r:0, l:None, u:None) [ OK ] (4/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /59f4b331 @BotBuildTests:aarch64_nvidia_grace+default P: bandwidth: 23571.78 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-14242462.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Nov 21 22:23:59 UTC 2025	uploaded	transfer of `eessi-2025.06-software-linux-aarch64-nvidia-grace-17637366940.tar.gz` to S3 bucket succeeded

ocaisa · 2025-11-21T15:22:43Z

bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=x86_64/generic
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=x86_64/amd/zen3
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=x86_64/amd/zen4
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=x86_64/intel/haswell
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=x86_64/intel/skylake_avx512
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=x86_64/intel/icelake
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=x86_64/intel/cascadelake
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=x86_64/intel/sapphirerapids
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=aarch64/generic
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=aarch64/neoverse_n1
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=aarch64/neoverse_v1

eessi-bot-aws · 2025-11-21T15:22:51Z

New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: generic
Building for: x86_64/generic
Job dir: /project/def-users/SHARED/jobs/2025.11/pr_1299/106598

date	job status	comment
Nov 21 15:22:50 UTC 2025	submitted	job id `106598` awaits release by job manager
Nov 21 15:23:01 UTC 2025	released	job awaits launch by Slurm scheduler
Nov 21 15:24:29 UTC 2025	running	job `106598` is running
Nov 21 17:55:15 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-106598.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-x86_64-generic-17637473430.tar.zst` size: 7260 MiB (7613082758 bytes) entries: 27631 modules under 2025.06/software/linux/x86_64/generic/modules/all `Arrow/17.0.0-gfbf-2024a.lua` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2.lua` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0.lua` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2.lua` `utf8proc/2.9.0-GCCcore-13.3.0.lua` software under 2025.06/software/linux/x86_64/generic/software `Arrow/17.0.0-gfbf-2024a` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2` `utf8proc/2.9.0-GCCcore-13.3.0` reprod directories under 2025.06/software/linux/x86_64/generic/reprod `Arrow/17.0.0-gfbf-2024a/20251121_154031UTC` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2/20251121_154546UTC` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0/20251121_152434UTC` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2/20251121_174528UTC` `utf8proc/2.9.0-GCCcore-13.3.0/20251121_152451UTC` other under 2025.06/software/linux/x86_64/generic no other files in tarball
Nov 21 17:55:15 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] (1/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /e4bf9965 @BotBuildTests:x86_64_intel_haswell+default P: latency: 3.03 us (r:0, l:None, u:None) [ OK ] (2/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /3da4890b @BotBuildTests:x86_64_intel_haswell+default P: latency: 2.36 us (r:0, l:None, u:None) [ OK ] (3/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /3255009a @BotBuildTests:x86_64_intel_haswell+default P: latency: 0.66 us (r:0, l:None, u:None) [ OK ] (4/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /59f4b331 @BotBuildTests:x86_64_intel_haswell+default P: bandwidth: 10047.05 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-106598.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Nov 21 22:27:19 UTC 2025	uploaded	transfer of `eessi-2025.06-software-linux-x86_64-generic-17637473430.tar.zst` to S3 bucket succeeded

eessi-bot-aws · 2025-11-21T15:22:56Z

New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: amd-zen3
Building for: x86_64/amd/zen3
Job dir: /project/def-users/SHARED/jobs/2025.11/pr_1299/106599

date	job status	comment
Nov 21 15:22:55 UTC 2025	submitted	job id `106599` awaits release by job manager
Nov 21 15:22:58 UTC 2025	released	job awaits launch by Slurm scheduler
Nov 21 15:24:27 UTC 2025	running	job `106599` is running
Nov 21 17:46:13 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-106599.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-x86_64-amd-zen3-17637467770.tar.zst` size: 7282 MiB (7635947977 bytes) entries: 27632 modules under 2025.06/software/linux/x86_64/amd/zen3/modules/all `Arrow/17.0.0-gfbf-2024a.lua` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2.lua` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0.lua` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2.lua` `utf8proc/2.9.0-GCCcore-13.3.0.lua` software under 2025.06/software/linux/x86_64/amd/zen3/software `Arrow/17.0.0-gfbf-2024a` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2` `utf8proc/2.9.0-GCCcore-13.3.0` reprod directories under 2025.06/software/linux/x86_64/amd/zen3/reprod `Arrow/17.0.0-gfbf-2024a/20251121_153957UTC` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2/20251121_154511UTC` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0/20251121_152435UTC` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2/20251121_173609UTC` `utf8proc/2.9.0-GCCcore-13.3.0/20251121_152452UTC` other under 2025.06/software/linux/x86_64/amd/zen3 no other files in tarball
Nov 21 17:46:13 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] (1/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /e4bf9965 @BotBuildTests:x86_64_amd_zen3+default P: latency: 0.8 us (r:0, l:None, u:None) [ OK ] (2/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /3da4890b @BotBuildTests:x86_64_amd_zen3+default P: latency: 1.15 us (r:0, l:None, u:None) [ OK ] (3/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /3255009a @BotBuildTests:x86_64_amd_zen3+default P: latency: 0.15 us (r:0, l:None, u:None) [ OK ] (4/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /59f4b331 @BotBuildTests:x86_64_amd_zen3+default P: bandwidth: 13598.32 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-106599.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Nov 21 22:29:59 UTC 2025	uploaded	transfer of `eessi-2025.06-software-linux-x86_64-amd-zen3-17637467770.tar.zst` to S3 bucket succeeded

eessi-bot-aws · 2025-11-21T15:23:00Z

New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: amd-zen4
Building for: x86_64/amd/zen4
Job dir: /project/def-users/SHARED/jobs/2025.11/pr_1299/106600

date	job status	comment
Nov 21 15:22:59 UTC 2025	submitted	job id `106600` awaits release by job manager
Nov 21 15:24:11 UTC 2025	released	job awaits launch by Slurm scheduler
Nov 21 15:30:44 UTC 2025	running	job `106600` is running
Nov 21 17:26:21 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-106600.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-x86_64-amd-zen4-17637456810.tar.zst` size: 7317 MiB (7673067037 bytes) entries: 27632 modules under 2025.06/software/linux/x86_64/amd/zen4/modules/all `Arrow/17.0.0-gfbf-2024a.lua` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2.lua` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0.lua` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2.lua` `utf8proc/2.9.0-GCCcore-13.3.0.lua` software under 2025.06/software/linux/x86_64/amd/zen4/software `Arrow/17.0.0-gfbf-2024a` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2` `utf8proc/2.9.0-GCCcore-13.3.0` reprod directories under 2025.06/software/linux/x86_64/amd/zen4/reprod `Arrow/17.0.0-gfbf-2024a/20251121_154231UTC` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2/20251121_154650UTC` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0/20251121_153050UTC` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2/20251121_171639UTC` `utf8proc/2.9.0-GCCcore-13.3.0/20251121_153104UTC` other under 2025.06/software/linux/x86_64/amd/zen4 no other files in tarball
Nov 21 17:26:21 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] (1/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /e4bf9965 @BotBuildTests:x86_64_amd_zen4+default P: latency: 1.44 us (r:0, l:None, u:None) [ OK ] (2/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /3da4890b @BotBuildTests:x86_64_amd_zen4+default P: latency: 3.18 us (r:0, l:None, u:None) [ OK ] (3/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /3255009a @BotBuildTests:x86_64_amd_zen4+default P: latency: 0.22 us (r:0, l:None, u:None) [ OK ] (4/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /59f4b331 @BotBuildTests:x86_64_amd_zen4+default P: bandwidth: 13297.39 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-106600.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Nov 21 22:32:34 UTC 2025	uploaded	transfer of `eessi-2025.06-software-linux-x86_64-amd-zen4-17637456810.tar.zst` to S3 bucket succeeded

eessi-bot-aws · 2025-11-21T15:23:04Z

New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: intel-haswell
Building for: x86_64/intel/haswell
Job dir: /project/def-users/SHARED/jobs/2025.11/pr_1299/106601

date	job status	comment
Nov 21 15:23:03 UTC 2025	submitted	job id `106601` awaits release by job manager
Nov 21 15:24:16 UTC 2025	released	job awaits launch by Slurm scheduler
Nov 21 15:25:46 UTC 2025	running	job `106601` is running
Nov 21 18:01:46 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-106601.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-x86_64-intel-haswell-17637477850.tar.zst` size: 7264 MiB (7617244776 bytes) entries: 27632 modules under 2025.06/software/linux/x86_64/intel/haswell/modules/all `Arrow/17.0.0-gfbf-2024a.lua` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2.lua` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0.lua` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2.lua` `utf8proc/2.9.0-GCCcore-13.3.0.lua` software under 2025.06/software/linux/x86_64/intel/haswell/software `Arrow/17.0.0-gfbf-2024a` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2` `utf8proc/2.9.0-GCCcore-13.3.0` reprod directories under 2025.06/software/linux/x86_64/intel/haswell/reprod `Arrow/17.0.0-gfbf-2024a/20251121_154206UTC` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2/20251121_154733UTC` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0/20251121_152546UTC` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2/20251121_175212UTC` `utf8proc/2.9.0-GCCcore-13.3.0/20251121_152603UTC` other under 2025.06/software/linux/x86_64/intel/haswell no other files in tarball
Nov 21 18:01:46 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] (1/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /e4bf9965 @BotBuildTests:x86_64_intel_haswell+default P: latency: 2.36 us (r:0, l:None, u:None) [ OK ] (2/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /3da4890b @BotBuildTests:x86_64_intel_haswell+default P: latency: 2.25 us (r:0, l:None, u:None) [ OK ] (3/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /3255009a @BotBuildTests:x86_64_intel_haswell+default P: latency: 1.4 us (r:0, l:None, u:None) [ OK ] (4/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /59f4b331 @BotBuildTests:x86_64_intel_haswell+default P: bandwidth: 10100.28 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-106601.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Nov 21 22:35:12 UTC 2025	uploaded	transfer of `eessi-2025.06-software-linux-x86_64-intel-haswell-17637477850.tar.zst` to S3 bucket succeeded

eessi-bot-aws · 2025-11-21T15:23:08Z

New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: intel-skylake_avx512
Building for: x86_64/intel/skylake_avx512
Job dir: /project/def-users/SHARED/jobs/2025.11/pr_1299/106602

date	job status	comment
Nov 21 15:23:07 UTC 2025	submitted	job id `106602` awaits release by job manager
Nov 21 15:24:20 UTC 2025	released	job awaits launch by Slurm scheduler
Nov 21 15:25:51 UTC 2025	running	job `106602` is running
Nov 21 18:10:14 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-106602.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-x86_64-intel-skylake_avx512-17637482340.tar.zst` size: 7264 MiB (7617027780 bytes) entries: 27632 modules under 2025.06/software/linux/x86_64/intel/skylake_avx512/modules/all `Arrow/17.0.0-gfbf-2024a.lua` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2.lua` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0.lua` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2.lua` `utf8proc/2.9.0-GCCcore-13.3.0.lua` software under 2025.06/software/linux/x86_64/intel/skylake_avx512/software `Arrow/17.0.0-gfbf-2024a` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2` `utf8proc/2.9.0-GCCcore-13.3.0` reprod directories under 2025.06/software/linux/x86_64/intel/skylake_avx512/reprod `Arrow/17.0.0-gfbf-2024a/20251121_154205UTC` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2/20251121_154746UTC` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0/20251121_152546UTC` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2/20251121_180043UTC` `utf8proc/2.9.0-GCCcore-13.3.0/20251121_152602UTC` other under 2025.06/software/linux/x86_64/intel/skylake_avx512 no other files in tarball
Nov 21 18:10:14 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] (1/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /e4bf9965 @BotBuildTests:x86_64_intel_skylake_avx512+default P: latency: 1.37 us (r:0, l:None, u:None) [ OK ] (2/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /3da4890b @BotBuildTests:x86_64_intel_skylake_avx512+default P: latency: 2.25 us (r:0, l:None, u:None) [ OK ] (3/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /3255009a @BotBuildTests:x86_64_intel_skylake_avx512+default P: latency: 0.3 us (r:0, l:None, u:None) [ OK ] (4/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /59f4b331 @BotBuildTests:x86_64_intel_skylake_avx512+default P: bandwidth: 10762.63 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-106602.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Nov 21 22:37:48 UTC 2025	uploaded	transfer of `eessi-2025.06-software-linux-x86_64-intel-skylake_avx512-17637482340.tar.zst` to S3 bucket succeeded

eessi-bot-aws · 2025-11-21T15:23:12Z

New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: intel-icelake
Building for: x86_64/intel/icelake
Job dir: /project/def-users/SHARED/jobs/2025.11/pr_1299/106603

date	job status	comment
Nov 21 15:23:11 UTC 2025	submitted	job id `106603` awaits release by job manager
Nov 21 15:24:18 UTC 2025	released	job awaits launch by Slurm scheduler
Nov 21 15:25:48 UTC 2025	running	job `106603` is running
Nov 21 17:34:37 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-106603.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-x86_64-intel-icelake-17637461620.tar.zst` size: 7273 MiB (7626855645 bytes) entries: 27632 modules under 2025.06/software/linux/x86_64/intel/icelake/modules/all `Arrow/17.0.0-gfbf-2024a.lua` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2.lua` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0.lua` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2.lua` `utf8proc/2.9.0-GCCcore-13.3.0.lua` software under 2025.06/software/linux/x86_64/intel/icelake/software `Arrow/17.0.0-gfbf-2024a` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2` `utf8proc/2.9.0-GCCcore-13.3.0` reprod directories under 2025.06/software/linux/x86_64/intel/icelake/reprod `Arrow/17.0.0-gfbf-2024a/20251121_153845UTC` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2/20251121_154312UTC` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0/20251121_152534UTC` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2/20251121_172611UTC` `utf8proc/2.9.0-GCCcore-13.3.0/20251121_152547UTC` other under 2025.06/software/linux/x86_64/intel/icelake no other files in tarball
Nov 21 17:34:37 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] (1/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /e4bf9965 @BotBuildTests:x86_64_intel_icelake+default P: latency: 1.01 us (r:0, l:None, u:None) [ OK ] (2/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /3da4890b @BotBuildTests:x86_64_intel_icelake+default P: latency: 1.61 us (r:0, l:None, u:None) [ OK ] (3/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /3255009a @BotBuildTests:x86_64_intel_icelake+default P: latency: 0.25 us (r:0, l:None, u:None) [ OK ] (4/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /59f4b331 @BotBuildTests:x86_64_intel_icelake+default P: bandwidth: 13120.6 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-106603.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Nov 21 22:40:23 UTC 2025	uploaded	transfer of `eessi-2025.06-software-linux-x86_64-intel-icelake-17637461620.tar.zst` to S3 bucket succeeded

eessi-bot-aws · 2025-11-21T15:23:17Z

New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: intel-cascadelake
Building for: x86_64/intel/cascadelake
Job dir: /project/def-users/SHARED/jobs/2025.11/pr_1299/106604

date	job status	comment
Nov 21 15:23:16 UTC 2025	submitted	job id `106604` awaits release by job manager
Nov 21 15:24:13 UTC 2025	released	job awaits launch by Slurm scheduler
Nov 21 15:25:44 UTC 2025	running	job `106604` is running
Nov 21 18:06:03 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-106604.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-x86_64-intel-cascadelake-17637480210.tar.zst` size: 7253 MiB (7605588856 bytes) entries: 27632 modules under 2025.06/software/linux/x86_64/intel/cascadelake/modules/all `Arrow/17.0.0-gfbf-2024a.lua` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2.lua` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0.lua` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2.lua` `utf8proc/2.9.0-GCCcore-13.3.0.lua` software under 2025.06/software/linux/x86_64/intel/cascadelake/software `Arrow/17.0.0-gfbf-2024a` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2` `utf8proc/2.9.0-GCCcore-13.3.0` reprod directories under 2025.06/software/linux/x86_64/intel/cascadelake/reprod `Arrow/17.0.0-gfbf-2024a/20251121_154240UTC` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2/20251121_154837UTC` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0/20251121_152545UTC` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2/20251121_175747UTC` `utf8proc/2.9.0-GCCcore-13.3.0/20251121_152602UTC` other under 2025.06/software/linux/x86_64/intel/cascadelake no other files in tarball
Nov 21 18:06:03 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] (1/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /e4bf9965 @BotBuildTests:x86_64_intel_cascadelake+default P: latency: 1.33 us (r:0, l:None, u:None) [ OK ] (2/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /3da4890b @BotBuildTests:x86_64_intel_cascadelake+default P: latency: 1.78 us (r:0, l:None, u:None) [ OK ] (3/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /3255009a @BotBuildTests:x86_64_intel_cascadelake+default P: latency: 0.34 us (r:0, l:None, u:None) [ OK ] (4/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /59f4b331 @BotBuildTests:x86_64_intel_cascadelake+default P: bandwidth: 10116.0 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-106604.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Nov 21 22:42:57 UTC 2025	uploaded	transfer of `eessi-2025.06-software-linux-x86_64-intel-cascadelake-17637480210.tar.zst` to S3 bucket succeeded

eessi-bot-aws · 2025-11-21T15:23:21Z

New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: intel-sapphirerapids
Building for: x86_64/intel/sapphirerapids
Job dir: /project/def-users/SHARED/jobs/2025.11/pr_1299/106605

date	job status	comment
Nov 21 15:23:20 UTC 2025	submitted	job id `106605` awaits release by job manager
Nov 21 15:24:23 UTC 2025	released	job awaits launch by Slurm scheduler
Nov 21 15:25:54 UTC 2025	running	job `106605` is running
Nov 21 18:12:17 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-106605.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-x86_64-intel-sapphirerapids-17637484030.tar.zst` size: 7266 MiB (7619060140 bytes) entries: 27632 modules under 2025.06/software/linux/x86_64/intel/sapphirerapids/modules/all `Arrow/17.0.0-gfbf-2024a.lua` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2.lua` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0.lua` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2.lua` `utf8proc/2.9.0-GCCcore-13.3.0.lua` software under 2025.06/software/linux/x86_64/intel/sapphirerapids/software `Arrow/17.0.0-gfbf-2024a` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2` `utf8proc/2.9.0-GCCcore-13.3.0` reprod directories under 2025.06/software/linux/x86_64/intel/sapphirerapids/reprod `Arrow/17.0.0-gfbf-2024a/20251121_154837UTC` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2/20251121_155916UTC` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0/20251121_152617UTC` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2/20251121_180304UTC` `utf8proc/2.9.0-GCCcore-13.3.0/20251121_152646UTC` other under 2025.06/software/linux/x86_64/intel/sapphirerapids no other files in tarball
Nov 21 18:12:17 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] (1/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /e4bf9965 @BotBuildTests:x86_64_intel_sapphirerapids+default P: latency: 1.47 us (r:0, l:None, u:None) [ OK ] (2/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /3da4890b @BotBuildTests:x86_64_intel_sapphirerapids+default P: latency: 1.6 us (r:0, l:None, u:None) [ OK ] (3/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /3255009a @BotBuildTests:x86_64_intel_sapphirerapids+default P: latency: 0.32 us (r:0, l:None, u:None) [ OK ] (4/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /59f4b331 @BotBuildTests:x86_64_intel_sapphirerapids+default P: bandwidth: 12408.42 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-106605.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Nov 21 22:45:33 UTC 2025	uploaded	transfer of `eessi-2025.06-software-linux-x86_64-intel-sapphirerapids-17637484030.tar.zst` to S3 bucket succeeded

eessi-bot-aws · 2025-11-21T15:23:25Z

New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: generic
Building for: aarch64/generic
Job dir: /project/def-users/SHARED/jobs/2025.11/pr_1299/106606

date	job status	comment
Nov 21 15:23:24 UTC 2025	submitted	job id `106606` awaits release by job manager
Nov 21 15:24:04 UTC 2025	released	job awaits launch by Slurm scheduler
Nov 21 15:25:32 UTC 2025	running	job `106606` is running
Nov 21 17:46:11 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-106606.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-aarch64-generic-17637467820.tar.zst` size: 7246 MiB (7598208579 bytes) entries: 27631 modules under 2025.06/software/linux/aarch64/generic/modules/all `Arrow/17.0.0-gfbf-2024a.lua` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2.lua` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0.lua` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2.lua` `utf8proc/2.9.0-GCCcore-13.3.0.lua` software under 2025.06/software/linux/aarch64/generic/software `Arrow/17.0.0-gfbf-2024a` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2` `utf8proc/2.9.0-GCCcore-13.3.0` reprod directories under 2025.06/software/linux/aarch64/generic/reprod `Arrow/17.0.0-gfbf-2024a/20251121_154210UTC` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2/20251121_154731UTC` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0/20251121_152530UTC` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2/20251121_173551UTC` `utf8proc/2.9.0-GCCcore-13.3.0/20251121_152544UTC` other under 2025.06/software/linux/aarch64/generic no other files in tarball
Nov 21 17:46:11 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] (1/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /e4bf9965 @BotBuildTests:aarch64_neoverse_n1+default P: latency: 1.96 us (r:0, l:None, u:None) [ OK ] (2/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /3da4890b @BotBuildTests:aarch64_neoverse_n1+default P: latency: 5.49 us (r:0, l:None, u:None) [ OK ] (3/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /3255009a @BotBuildTests:aarch64_neoverse_n1+default P: latency: 0.3 us (r:0, l:None, u:None) [ OK ] (4/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /59f4b331 @BotBuildTests:aarch64_neoverse_n1+default P: bandwidth: 15950.96 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-106606.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Nov 21 22:48:09 UTC 2025	uploaded	transfer of `eessi-2025.06-software-linux-aarch64-generic-17637467820.tar.zst` to S3 bucket succeeded

eessi-bot-aws · 2025-11-21T15:23:30Z

New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: neoverse_n1
Building for: aarch64/neoverse_n1
Job dir: /project/def-users/SHARED/jobs/2025.11/pr_1299/106607

date	job status	comment
Nov 21 15:23:28 UTC 2025	submitted	job id `106607` awaits release by job manager
Nov 21 15:24:06 UTC 2025	released	job awaits launch by Slurm scheduler
Nov 21 15:25:34 UTC 2025	running	job `106607` is running
Nov 21 17:55:13 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-106607.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-aarch64-neoverse_n1-17637472580.tar.zst` size: 7236 MiB (7588067697 bytes) entries: 27631 modules under 2025.06/software/linux/aarch64/neoverse_n1/modules/all `Arrow/17.0.0-gfbf-2024a.lua` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2.lua` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0.lua` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2.lua` `utf8proc/2.9.0-GCCcore-13.3.0.lua` software under 2025.06/software/linux/aarch64/neoverse_n1/software `Arrow/17.0.0-gfbf-2024a` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2` `utf8proc/2.9.0-GCCcore-13.3.0` reprod directories under 2025.06/software/linux/aarch64/neoverse_n1/reprod `Arrow/17.0.0-gfbf-2024a/20251121_154231UTC` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2/20251121_154757UTC` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0/20251121_152531UTC` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2/20251121_174345UTC` `utf8proc/2.9.0-GCCcore-13.3.0/20251121_152545UTC` other under 2025.06/software/linux/aarch64/neoverse_n1 no other files in tarball
Nov 21 17:55:13 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] (1/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /e4bf9965 @BotBuildTests:aarch64_neoverse_n1+default P: latency: 2.02 us (r:0, l:None, u:None) [ OK ] (2/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /3da4890b @BotBuildTests:aarch64_neoverse_n1+default P: latency: 5.53 us (r:0, l:None, u:None) [ OK ] (3/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /3255009a @BotBuildTests:aarch64_neoverse_n1+default P: latency: 0.29 us (r:0, l:None, u:None) [ OK ] (4/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /59f4b331 @BotBuildTests:aarch64_neoverse_n1+default P: bandwidth: 16083.05 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-106607.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Nov 21 22:50:45 UTC 2025	uploaded	transfer of `eessi-2025.06-software-linux-aarch64-neoverse_n1-17637472580.tar.zst` to S3 bucket succeeded

eessi-bot-aws · 2025-11-21T15:23:34Z

New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: neoverse_v1
Building for: aarch64/neoverse_v1
Job dir: /project/def-users/SHARED/jobs/2025.11/pr_1299/106608

date	job status	comment
Nov 21 15:23:33 UTC 2025	submitted	job id `106608` awaits release by job manager
Nov 21 15:24:09 UTC 2025	released	job awaits launch by Slurm scheduler
Nov 21 15:25:37 UTC 2025	running	job `106608` is running
Nov 21 17:13:11 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-106608.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-aarch64-neoverse_v1-17637448000.tar.zst` size: 7248 MiB (7600347430 bytes) entries: 27631 modules under 2025.06/software/linux/aarch64/neoverse_v1/modules/all `Arrow/17.0.0-gfbf-2024a.lua` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2.lua` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0.lua` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2.lua` `utf8proc/2.9.0-GCCcore-13.3.0.lua` software under 2025.06/software/linux/aarch64/neoverse_v1/software `Arrow/17.0.0-gfbf-2024a` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2` `utf8proc/2.9.0-GCCcore-13.3.0` reprod directories under 2025.06/software/linux/aarch64/neoverse_v1/reprod `Arrow/17.0.0-gfbf-2024a/20251121_153726UTC` `arrow-R/17.0.0.1-foss-2024a-R-4.4.2/20251121_154122UTC` `RapidJSON/1.1.0-20240815-GCCcore-13.3.0/20251121_152518UTC` `R-bundle-Bioconductor/3.20-foss-2024a-R-4.4.2/20251121_170322UTC` `utf8proc/2.9.0-GCCcore-13.3.0/20251121_152529UTC` other under 2025.06/software/linux/aarch64/neoverse_v1 no other files in tarball
Nov 21 17:13:11 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] (1/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /e4bf9965 @BotBuildTests:aarch64_neoverse_v1+default P: latency: 1.6 us (r:0, l:None, u:None) [ OK ] (2/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /3da4890b @BotBuildTests:aarch64_neoverse_v1+default P: latency: 4.7 us (r:0, l:None, u:None) [ OK ] (3/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /3255009a @BotBuildTests:aarch64_neoverse_v1+default P: latency: 0.24 us (r:0, l:None, u:None) [ OK ] (4/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /59f4b331 @BotBuildTests:aarch64_neoverse_v1+default P: bandwidth: 28441.5 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-106608.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Nov 21 22:53:20 UTC 2025	uploaded	transfer of `eessi-2025.06-software-linux-aarch64-neoverse_v1-17637448000.tar.zst` to S3 bucket succeeded

{2025.06}[2024a] R-bundle-Bioconductor 3.20

14a8ae7

Merge branch 'main' into r_bioconductor_2025.06

0bdbc31

This was referenced Nov 19, 2025

{2025.06}[2024a] missing dependencies of PyTorch 2.6.0 #1294

Merged

Disable --with-sysroot option for UCX EESSI/software-layer-scripts#133

Merged

Merge branch 'main' into r_bioconductor_2025.06

03b6268

ocaisa added ready-to-deploy Mark a PR as ready to deploy ready-to-review 2025.06-software.eessi.io 2025.06 version of software.eessi.io labels Nov 21, 2025

bedroge previously approved these changes Nov 21, 2025

View reviewed changes

bedroge added bot:deploy Ask bot to deploy missing software installations to EESSI and removed ready-to-deploy Mark a PR as ready to deploy ready-to-review labels Nov 21, 2025

bedroge and others added 2 commits November 21, 2025 23:22

Merge branch 'main' into r_bioconductor_2025.06

8e1af76

Merge branch 'main' into r_bioconductor_2025.06

4e7abdb

ocaisa dismissed bedroge’s stale review via 4e7abdb November 21, 2025 22:34

bedroge approved these changes Nov 21, 2025

View reviewed changes

bedroge merged commit ae398b7 into EESSI:main Nov 22, 2025
90 of 105 checks passed

{2025.06}[2024a] R-bundle-Bioconductor 3.20 #1299

{2025.06}[2024a] R-bundle-Bioconductor 3.20 #1299

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