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Fix: typo
fix: create directories before running some of the commands.
chore: add missing "."
Updated Helixer commands (markdown)
chore: add example run.
chore: command and visualization are two different lines.
chore: review all commands and change whole Chr3 for a specific region.
fix: add missing directory.
fix: formatting
chore: add visualization of mikado summaries
fix: reformat to match Gemy aesthetic
fix: errors of formatting
chore: add hyperlink to documentation and modify the aesthetic
fix:correct title issue
Add helixer commands