optimize dpclust to run heavy computational pathways in cpp#1
Merged
matthewpeterkort merged 9 commits intomasterfrom Apr 21, 2026
Merged
optimize dpclust to run heavy computational pathways in cpp#1matthewpeterkort merged 9 commits intomasterfrom
matthewpeterkort merged 9 commits intomasterfrom
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…ve/absolute pathing issues
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optimize critical paths by implementing them in C++
Should be ready for another round of testing.
See https://quay.io/repository/ohsu-comp-bio/dpclust?tab=tags for dockerfile if you are running this as a .sif file.
Recent updates should address memory issues and add parallelization to the RCPP code as well as clean up logging so that it is a more legible as well as simplify callers significantly.
If you are getting errors you might not have the correct dependencies installed in your environment. Check the provided Dockerfile in this PR for implementation details.