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Merged
merged 11 commits into from
Nov 1, 2022
Merged

Dev ensprod 8249 #11

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e02566f
Changed _session to use session_scope()
dpopleton Oct 24, 2022
177eefc
Refactor for dbconnect
dpopleton Oct 25, 2022
c681f09
Reimplemented location
dpopleton Oct 25, 2022
dcbc993
Code clean up
dpopleton Oct 25, 2022
cde60f1
api.py modified for ORM and simplicity. Tests integrated with TRAVIS
dpopleton Oct 31, 2022
7e2d617
Test Fix
dpopleton Oct 31, 2022
bfc531d
Test Fix
dpopleton Oct 31, 2022
3f6c8d9
Test Fix
dpopleton Oct 31, 2022
4d6575e
mySQL version fix
dpopleton Oct 31, 2022
05ba2a0
mySQL version fix
dpopleton Oct 31, 2022
7f3eb3f
removed sqlite
dpopleton Oct 31, 2022
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1 change: 0 additions & 1 deletion .python-version
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4 changes: 4 additions & 0 deletions .travis.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -8,10 +8,14 @@ python:
env:
- TESTENV=test

services:
- mysql

before_script:
- pip install -r requirements-test.txt
- pip install .
- export PYTHONPATH=$PYTHONPATH:$PWD/src
- mysql -u root -h 127.0.0.1 -e 'CREATE DATABASE ncbi_taxonomy; CREATE DATABASE ensembl_metadata_2020; use ncbi_taxonomy; source tests/ncbi_taxonomy.sql; use ensembl_metadata_2020; source tests/ensembl_metadata_2020.sql;'

script:
- if [[ "$TESTENV" == "test" ]]; then coverage run -m pytest; fi
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