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Added support for a new chromosome location value found in the babesia_bovis_gca000165395v2_core_114_1 .

Changes
Updated the location_mapping dictionary in the metadata updater to include:

'apicoplast_chromosome': 'SO:0001259'
This maps the new location to the correct Sequence Ontology (SO) term: SO:0001259.

+----------+-----------------+---------+-----------------------+-------------------+
| name     | coord_system_id | length  | value                 | name              |
+----------+-----------------+---------+-----------------------+-------------------+
| CM031755 |               1 |   33351 | apicoplast_chromosome | sequence_location |
| CM031752 |               1 | 1246099 | nuclear_chromosome    | sequence_location |
| CM031753 |               1 | 1729419 | nuclear_chromosome    | sequence_location |
| CM031754 |               1 | 2593320 | nuclear_chromosome    | sequence_location |
+----------+-----------------+---------+-----------------------+-------------------+

New genome submitted by the genebuild babesia_bovis_gca000165395v2_core_114_1 has value apicoplast_chromosome which is not defined in metadata updater, added 'apicoplast_chromosome': 'SO:0001259', to location mapping from the source http://sequenceontology.org/browser/current_release/term/SO:0001259

@vinay-ebi vinay-ebi requested review from dpopleton and nwillhoft July 2, 2025 14:32
@vinay-ebi vinay-ebi self-assigned this Jul 2, 2025
@vinay-ebi vinay-ebi added the bug Something isn't working label Jul 2, 2025
@vinay-ebi vinay-ebi merged commit 47ce160 into main Jul 2, 2025
1 of 2 checks passed
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3 participants