Skip to content

Update FTP path for good ... twice #72

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 1 commit into from
Feb 20, 2024
Merged

Update FTP path for good ... twice #72

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion src/ensembl/production/metadata/api/models/genome.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -77,7 +77,7 @@ def get_public_path(self, dataset_type='all', release=None):

# Defining path templates
path_templates = {
'genebuild': f"{common_path}/genebuild/{genebuild_version}",
'genebuild': f"{common_path}/geneset/{genebuild_version}",
'assembly': f"{common_path}/genome",
'homologies': f"{common_path}/homology/{genebuild_version}",
'regulation': f"{common_path}/regulation",
Expand Down
4 changes: 2 additions & 2 deletions src/tests/test_api.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -38,7 +38,7 @@ def test_get_public_path(self, multi_dbs):
assert len(paths) == 4
# assert all("/genebuild/" in path for path in paths)
path = genome.get_public_path(dataset_type='genebuild')
assert path[0]['path'] == 'Saccharomyces_cerevisiae_S288c/GCA_000146045.2/ensembl/genebuild/2018_10'
assert path[0]['path'] == 'Saccharomyces_cerevisiae_S288c/GCA_000146045.2/ensembl/geneset/2018_10'
path = genome.get_public_path(dataset_type='assembly')
assert path[0]['path'] == 'Saccharomyces_cerevisiae_S288c/GCA_000146045.2/ensembl/genome'
path = genome.get_public_path(dataset_type='variation')
Expand All @@ -58,7 +58,7 @@ def test_default_public_path(self, multi_dbs):
assert len(paths) == 5
# assert all("/genebuild/" in path for path in paths)
path = genome.get_public_path(dataset_type='genebuild')
assert path[0]['path'] == 'Homo_sapiens/GCA_000001405.29/ensembl/genebuild/2023_03'
assert path[0]['path'] == 'Homo_sapiens/GCA_000001405.29/ensembl/geneset/2023_03'
path = genome.get_public_path(dataset_type='assembly')
assert path[0]['path'] == 'Homo_sapiens/GCA_000001405.29/ensembl/genome'
path = genome.get_public_path(dataset_type='variation')
Expand Down