Initial Simulation Scenarios

[EricArcher]

Simple simulation

• K: 1 & 2
• Ne: 50, 500 (retain all individuals)
• loci: 10,000 SNPs, 20 microsats

Harmonic mean of replicates
Quantify variance
If estimator is biased due to thousands of unlinked loci, we need to know how biased it is or not used as many unlinked loci
How important is it to link SSR and SNP data for legacy data sets?

[bhand22]

Not sure if it is of interest, but we could also do some additional simulations using age structured populations in AgeStrucNe. It also has a lot of flexibility and uses SimuPOP as the simulator.