Feature/SOF-7782 Maxwell disorder NB

examples/job/create_and_submit_job.ipynb

@@ -105,7 +105,7 @@
    "outputs": [],
    "source": [
     "from utils.settings import ENDPOINT_ARGS, ACCOUNT_ID\n",
-    "from utils.generic import display_JSON\n",
+    "from utils.visualize import display_JSON\n",
     "\n",
     "from exabyte_api_client.endpoints.jobs import JobEndpoints\n",
     "from exabyte_api_client.endpoints.materials import MaterialEndpoints\n",

examples/job/get-file-from-job.ipynb

@@ -67,6 +67,7 @@
   },
   {
    "cell_type": "code",
+   "execution_count": null,
    "metadata": {
     "cellView": "form",
     "colab": {
@@ -75,6 +76,7 @@
     "id": "nXDYU_oP8GIr",
     "outputId": "aee909b7-1a48-43c2-81b7-3659e0fc9c79"
    },
+   "outputs": [],
    "source": [
     "# @title Authorization Form\n",
     "ACCOUNT_ID = \"ACCOUNT_ID\"  # @param {type:\"string\"}\n",
@@ -115,9 +117,7 @@
     "    from mat3ra.utils.jupyterlite.packages import install_packages\n",
     "\n",
     "    await install_packages(\"api_examples\")"
-   ],
-   "outputs": [],
-   "execution_count": null
+   ]
   },
   {
    "attachments": {},
@@ -131,15 +131,19 @@
   },
   {
    "cell_type": "code",
+   "execution_count": null,
    "metadata": {
     "id": "rG9HfjnR8GIs"
    },
+   "outputs": [],
    "source": [
     "# Import settings file and utils file\n",
     "from utils.settings import ENDPOINT_ARGS, ACCOUNT_ID\n",
-    "from utils.generic import (\n",
+    "from utils.api import (\n",
     "    wait_for_jobs_to_finish,\n",
     "    get_property_by_subworkflow_and_unit_indicies,\n",
+    ")\n",
+    "from utils.visualize import (\n",
     "    dataframe_to_html,\n",
     "    display_JSON,\n",
     ")\n",
@@ -150,9 +154,7 @@
     "from exabyte_api_client.endpoints.materials import MaterialEndpoints\n",
     "from exabyte_api_client.endpoints.bank_materials import BankMaterialEndpoints\n",
     "from exabyte_api_client.endpoints.bank_workflows import BankWorkflowEndpoints"
-   ],
-   "outputs": [],
-   "execution_count": null
+   ]
   },
   {
    "attachments": {},
@@ -176,13 +178,15 @@
   },
   {
    "cell_type": "code",
+   "execution_count": null,
    "metadata": {
     "colab": {
      "base_uri": "https://localhost:8080/"
     },
     "id": "le9f28c08GIt",
     "outputId": "27e9b94f-29dd-4742-9448-2e1bce79cb15"
    },
+   "outputs": [],
    "source": [
     "# Get some account information\n",
     "project_endpoints = ProjectEndpoints(*ENDPOINT_ARGS)\n",
@@ -215,9 +219,7 @@
     "# Submit the job\n",
     "job_endpoints.submit(job[\"_id\"])\n",
     "wait_for_jobs_to_finish(job_endpoints, [job[\"_id\"]])"
-   ],
-   "outputs": [],
-   "execution_count": null
+   ]
   },
   {
    "attachments": {},
@@ -244,22 +246,22 @@
   },
   {
    "cell_type": "code",
+   "execution_count": null,
    "metadata": {
     "colab": {
      "base_uri": "https://localhost:8080/"
     },
     "id": "yijRe7qp8GIv",
     "outputId": "19b147fc-736e-41f0-bd0f-6f69e77b0adf"
    },
+   "outputs": [],
    "source": [
     "files = job_endpoints.list_files(job[\"_id\"])\n",
     "paths = [file[\"key\"] for file in files]\n",
     "for path in paths:\n",
     "    if \"outdir\" not in path:\n",
     "        print(path)"
-   ],
-   "outputs": [],
-   "execution_count": null
+   ]
   },
   {
    "attachments": {},
@@ -284,21 +286,21 @@
   },
   {
    "cell_type": "code",
+   "execution_count": null,
    "metadata": {
     "colab": {
      "base_uri": "https://localhost:8080/"
     },
     "id": "U2dq0A1e8GIw",
     "outputId": "7b4f8c36-6342-46fa-d02e-0825b44e6c64"
    },
+   "outputs": [],
    "source": [
     "for file in files:\n",
     "    if file[\"name\"] == \"pw_scf.out\":\n",
     "        output_file_metadata = file\n",
     "display_JSON(output_file_metadata)"
-   ],
-   "outputs": [],
-   "execution_count": null
+   ]
   },
   {
    "attachments": {},
@@ -314,13 +316,15 @@
   },
   {
    "cell_type": "code",
+   "execution_count": null,
    "metadata": {
     "colab": {
      "base_uri": "https://localhost:8080/"
     },
     "id": "OpdOMuDT8GIw",
     "outputId": "e4e2e6b1-8431-439a-8606-ae500534e601"
    },
+   "outputs": [],
    "source": [
     "from mat3ra.utils.jupyterlite.url import read_from_url\n",
     "\n",
@@ -330,9 +334,7 @@
     "lines = output_file.split(\"\\n\")\n",
     "for line in lines[-90:]:\n",
     "    print(line)"
-   ],
-   "outputs": [],
-   "execution_count": null
+   ]
   },
   {
    "attachments": {},
@@ -348,16 +350,16 @@
   },
   {
    "cell_type": "code",
+   "execution_count": null,
    "metadata": {
     "id": "COPinBrO8GIx"
    },
+   "outputs": [],
    "source": [
     "from utils.jupyterlite import download_content_to_file\n",
     "\n",
     "download_content_to_file(content=output_file, filename=output_file_metadata[\"name\"])"
-   ],
-   "outputs": [],
-   "execution_count": null
+   ]
   }
  ],
  "metadata": {