Fix cleanup resume limit batching

[chubes4]

Summary

• Fixes cleanup resume limit does not drain multiple worktree removal rows #645.
• Lets DB-backed cleanup apply/resume pass the full remaining --limit capacity to worktree-removal direct apply instead of hard-capping each invocation to one row.
• Adds explicit JSON evidence fields: processed, applied, skipped, and next_command.
• Updates focused cleanup-run smoke coverage for multi-row resume while preserving limit=1 behavior.

Verification

• composer install
• php -l inc/Workspace/CleanupRunService.php
• php -l tests/smoke-cleanup-run-storage.php
• php tests/smoke-cleanup-run-storage.php
• php tests/smoke-worktree-cleanup-remove-guard.php

AI assistance

• AI assistance: Yes
• Tool(s): OpenCode (openai/gpt-5.5)
• Used for: Implemented the cleanup resume batching fix, updated focused smoke coverage, and ran targeted verification. Chris remains responsible for review and merge.

[homeboy-ci]

Homeboy Results — data-machine-code

Lint

❌ lint — failed

ℹ️ Auto-fix: homeboy lint data-machine-code --path /home/runner/work/data-machine-code/data-machine-code --changed-since f9eac72 --fix (or homeboy refactor data-machine-code --path /home/runner/work/data-machine-code/data-machine-code --changed-since f9eac72 --from lint --write)
ℹ️ Some issues may require manual fixes
ℹ️ Full options: homeboy docs commands/lint
ℹ️ Save lint baseline: homeboy lint data-machine-code --baseline
Deep dive: homeboy lint data-machine-code --changed-since f9eac72

Artifacts and drill-down

• CI results artifact: homeboy-ci-results-data-machine-code-lint-quality-Linux-node24 contains immediate command JSON for this action invocation.
• Observation artifact: homeboy-observations-data-machine-code-lint-quality-Linux-node24 contains exported Homeboy run history for deeper queries.
• Drill-down: download the observation artifact, then run homeboy runs import <dir>, homeboy runs list, and homeboy runs findings <run-id>.
• Artifacts are attached to the workflow run: https://github.com/Extra-Chill/data-machine-code/actions/runs/27391997189

Test

✅ test — passed

ℹ️ Auto-fix lint issues: homeboy refactor data-machine-code --from lint --write
ℹ️ Collect coverage: homeboy test data-machine-code --coverage
ℹ️ Save test baseline: homeboy test data-machine-code --baseline
ℹ️ Pass args to test runner: homeboy test -- [args]
ℹ️ Full options: homeboy docs commands/test
Deep dive: homeboy test data-machine-code --changed-since f9eac72

Artifacts and drill-down

• CI results artifact: homeboy-ci-results-data-machine-code-test-quality-Linux-node24 contains immediate command JSON for this action invocation.
• Observation artifact: homeboy-observations-data-machine-code-test-quality-Linux-node24 contains exported Homeboy run history for deeper queries.
• Drill-down: download the observation artifact, then run homeboy runs import <dir>, homeboy runs list, and homeboy runs findings <run-id>.
• Artifacts are attached to the workflow run: https://github.com/Extra-Chill/data-machine-code/actions/runs/27391997189

Audit

✅ audit — passed

• audit — 227 finding(s)
• Total: 227 finding(s)

Deep dive: homeboy audit data-machine-code --changed-since f9eac72

Artifacts and drill-down

• CI results artifact: homeboy-ci-results-data-machine-code-audit-quality-Linux-node24 contains immediate command JSON for this action invocation.
• Observation artifact: homeboy-observations-data-machine-code-audit-quality-Linux-node24 contains exported Homeboy run history for deeper queries.
• Drill-down: download the observation artifact, then run homeboy runs import <dir>, homeboy runs list, and homeboy runs findings <run-id>.
• Artifacts are attached to the workflow run: https://github.com/Extra-Chill/data-machine-code/actions/runs/27391997189

Tooling versions

• Homeboy CLI: homeboy 0.228.13+ad443b1
• Extension: wordpress from https://github.com/Extra-Chill/homeboy-extensions
• Extension revision: 19cdd6a5
• Action: unknown@unknown