Quality and covnventions

[bobturneruk]

• Implement poetry
• Implement dependabot
• Folder structure as per https://github.com/FAIRDataPipeline/FAIR-CLI
• Sonar cloud static analysis
  • Include flake8
  • Include mypy
• Linting
  • flake8
  • black
• Implement typehints
• Use pytest markers (where appropriate)
• CII best practise badge
• Make docstrings and automatic doc generation consistent with https://github.com/FAIRDataPipeline/FAIR-CLI